Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02356 ATGGAGTCTGTCAAGTTCATTAACATGAATGCCAAACACTCCTCCATCTTCTTATTAGCCATGATCTTTGTTCTGATCTTAGcttcagcaaatgccaaaattcacgagcacgagtttgttgttgaagcaactccagtgaagaggctgtgcaaaacccacaacagcatcaccgtgaatgggcaatacccgggcccaacgttggaaatcaacaatggagacactttggttgtcaaagtcactaacaaagctcgttacaatgtgaccattcattggcacggtgttaggcaaatgagaacaggatgggcagatggaccagaatttgtgactcagtgcccgattcgtcctggaggaagttacacctaccgttttaccgttcaaggacaagaaggcacactttggtggcacgctcatagctcatggttaagggccactgtttacggtgctttaatcattcgtcctagggaaggagaaccctaccctttccccaagccTAAGCACGAAACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCTATTGATGTTGTGAGGCAGGCCACGCGAACTGGGGGAGCTCCAAACGTGTCTGATGCATACACTATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCTAGCAAAGACACTACcATTGTTCCAATCCATTCCGGCGAGACTAACCTTCTACGTGTTATCAATGCTGCACTCAATCAACCTCTCTTCTTCACCGTCGCAAACCACAAACTCACCGTGGTTGGCGCCGACGCCTCCTACCTCAAACCCTTCACCACCAAAGTCCTCATGCTAGGACCCGGTCAAACCACCGATGTATTGATCACCGGCGACCAGCCACCTTCCCCCTACTACATGGCGGCGCGTGCGTACCAATCTGCCCAAAACGCCGCGTTCGACAACACCACCACCACCGCCATACTCGAATACAAGTCACCTCATCACAGTAATCATTCTCACCATCATTCCAAAGGAGCACTGAAGAAAAAAACCAAACCGATCATGCCCTCACTCCCTGCCTACAACGATACAAACACAGTCACTGCCTTCAGCAAAAGCTTTAGAAGCCCTAGAAAAGTTGAAGTCCCCGCTGAAATCGACCAGAGCCTGTTCTTCACTGTGGGCTTAGGAATCAACAAGTGCCCCAAAAACTTTGGACCAAAGAGGTGTCAGGGACCcattaatgggacgaggttcactgcgagcatgaacaacgtgtctttcgttctcccgaacaacgtgtccatcttgcaggctcaccacctcggaatccccggagtgttcaccactgattttccggggaagccgccggtgaagtttgattacaccggcaacgtgagtcgttcgctgtggcaacctgttcccgggacaaaggcacacaagttgaagtttgggtccagggtgcagattgtgttgcaggacactagcattgttactcctgagaaccaccctatccatcttcatggctacgatttctacatcgttgctgaggggttcggaaacttcgacgccaagaaagatacggccaaattcaaccttgttgatccacctttgaggaacactgtggccgtgcctgtaaatggatgggctgttattcgatttgtcgctgataaccctggtgcctggcttttgcattgtcacttggacgttcacatcggatggggtttggctacggtgttgttggtggagaacggagttgggaagttgcaatccatagagcctcctccgctggatcttccTCTTTGTTAG 1764 0.2211 MESVKFINMNAKHSSIFLLAMIFVLILASANAKIHEHEFVVEATPVKRLCKTHNSITVNGQYPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGEPYPFPKPKHETPILLGEWWDANPIDVVRQATRTGGAPNVSDAYTINGQPGDLYKCSSKDTTIVPIHSGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLITGDQPPSPYYMAARAYQSAQNAAFDNTTTTAILEYKSPHHSNHSHHHSKGALKKKTKPIMPSLPAYNDTNTVTAFSKSFRSPRKVEVPAEIDQSLFFTVGLGINKCPKNFGPKRCQGPINGTRFTASMNNVSFVLPNNVSILQAHHLGIPGVFTTDFPGKPPVKFDYTGNVSRSLWQPVPGTKAHKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDAKKDTAKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLLHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPLDLPLC 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02356 587 CDD CuRO_2_LCC_plant 169 315 IPR034285 -
Gma11g02356 587 SUPERFAMILY Cupredoxins 29 180 IPR008972 -
Gma11g02356 587 PANTHER LACCASE 11 587 - -
Gma11g02356 587 SUPERFAMILY Cupredoxins 161 362 IPR008972 -
Gma11g02356 587 CDD CuRO_3_LCC_plant 432 570 IPR034289 GO:0005507
Gma11g02356 587 Pfam Multicopper oxidase 41 155 IPR011707 GO:0005507
Gma11g02356 587 ProSitePatterns Multicopper oxidases signature 2. 550 561 IPR002355 GO:0005507
Gma11g02356 587 Pfam Multicopper oxidase 167 316 IPR001117 -
Gma11g02356 587 PANTHER MULTI-COPPER OXIDASE 11 587 IPR045087 -
Gma11g02356 587 Gene3D - 165 364 IPR008972 -
Gma11g02356 587 Pfam Multicopper oxidase 437 569 IPR011706 GO:0005507|GO:0016491
Gma11g02356 587 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Gma11g02356 587 Gene3D - 394 587 IPR008972 -
Gma11g02356 587 ProSitePatterns Multicopper oxidases signature 1. 545 565 IPR033138 -
Gma11g02356 587 Gene3D - 35 164 IPR008972 -
Gma11g02356 587 SUPERFAMILY Cupredoxins 367 587 IPR008972 -
Gma11g02356 587 TIGRFAM laccase: laccase 32 587 IPR017761 GO:0046274|GO:0048046|GO:0052716
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02356 Gma-Chr11 38961565 38966244 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02356 K05909 - gmx:100808948 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00219 18 1753892 1758751 Gma11g02356 11 38961565 38966244 ECH
Gma11g02356 11 38961565 38966244 Gma11g02356 11 38961565 38966244 ECH
Gma18g00219 18 1753892 1758751 Gma11g02356 11 38961565 38966244 GST
Gma11g02356 11 38961565 38966244 Gma14g00472 14 4453024 4457015 PCT
Gma14g00472 14 4453024 4457015 Gma11g02356 11 38961565 38966244 PCT