Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01196 ATGGAGGCTTTTGTATTTGTGTTTGTGGCCATTCTGTTGTGTGGTTGTGTTGCTGCTAAAGAGTGCACAAACATTCCAACACAATCTCATACATTCAGGTATGAGCTGTTGATGTCCAAGAATGCAACATGGAAGGCAGAGGTGATGGATCACTACCATTTGACACCAACGGATGAAACGGTTTGGGCGGATTTGCTGCCTCGGAAGTTCTTGTCGGAACAGAACCAACATGACTGGGGGGTGATGTATAGGAAGATTAAGAACATGGGTGTGTTCAAGTCTGGTGAAGGATTTCTCAAAGAAGTGCCTCTTCAGGATGTGAGGTTGCATAAGGATTCAATCCATGCTAGAGCACAGCAAACAAATTTGGAGTATCTGTTGATGTTGGATGTGGACAGCTTGATTTGGAGCTTCAGGAAGACAGCTGGTCTATCCACACCTGGGACTCCTTATGGAGGGTGGGAAGGTCCAGAAGTTGAACTCAGGGGTCATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTAATGTGGGCCAGCACACAGAATGATACCCTGAAGCAGAAAATGTCATCTCTTGTTGCTGGTCTGTCTGCCTGTCAGGAGAAAATTGGAACCGGGTATCTATCTGCATTTCCGTCTGAGTTTTTTGATCGATTTGAAACTGTCCAACCTGTTTGGGCCCCCTATTATACCATTCACAAGATCTTGGCTGGCCTCTTGGATCAACATACTTTTGCTGGAAACCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCTACAACAGAGTGCAGAATGTAATAACAAAGTACACTGTAAATAGGCATTATGAATCACTGAATGAGGAAACTGGAGGGATGAATGATGTCCTTTACAGATTATACAGCATAACGGGAGATTCTAAGCACCTAGTGTTGGCTCACCTTTTTGACAAGCCATGCTTTTTAGGGTTGCTTGCAATGCAGGCTAATGACATAGCTAATTTTCATGCCAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTGTATAAGCAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTATGCAACTGGAGGGACATCAGTCAGCGAGTTCTGGAGTGATCCAAAGAGAATAGCAGACAACTTAAGAACGACAGAGAATGAAGAATCATGCACAACTTATAATATGTTGAAGGTTTCGCGCCACCTGTTTAGATGGACCAAAGAAGTCTCTTATGCAGACTATTACGAGCGCGCCTTAACCAATGGTGTGCTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTATATGCTTCCACTAGGCTTTGCGGTTTCAAAGGCTAGAACTGGACATAGTTGGGGAACACAATTTGACTCTTTCTGGTGTTGCTATGGAACAGGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAGGAGGAAGGAAAAGATCCCACACTTTACATCATTCAGTACATACCAAGCTCATTTAATTGGAAATCAGGCAAAATTTTGCTCAATCAGACAGTTGTTCCAGTTGCTTCATCGGATCCTTACCTACGTGTGACATTTACGTTTTCTCCTGTTGAGAATACTTTGTCTACATTGAACTTTCGACTACCAAGTTGGACTCTTCTGGATGGCGCCAAGGGGATATTAAATGGTCAAACTTTATCCCTGCCAAATCCAGGAAAGTATTTGTCAGTCACAAGGCAATGGAGTGGTAGTGACAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCTGGTCATACAACCGGTGGTGATTGGGACCTTAAAGCTGGGGCTAACAATGCAGACTGGATTACTCCTATTCCTGCCAGTTACAATAGTCAACTAGTTTCTTTTTTCCGAGACTTTGAAGGATCAACTTTTGTCTTGACAAATTCAAACAAATCAGTTTCAATGCAAAAATTGCCTGAATATGGCACTGATTTGACTCTTCAGGCAACCTTTAGGATTGTCCTAAAAGATTCTTCCTCAAAATTTTCAACATTAGCAGATGCTAATGATAGATCAGTGATGTTAGAACCATTTGATTTTCCTGGAATGAATGTGATTCACCAAGGAGCAGGCAAACCTCTTCTCATTGCAGATTCTTCTCATGGCGGGCCATCTTCTGTTTTCCTTTTGGTACCAGGATTGGATGGACGAAATGAAACTGTATCTTTAGAATCCCAGAGCAACAAAGGCTGTTATGTGTACAGTGGTATGAGCCCTAGTTCAGGAGTCAAGCTCAGTTGCAAATCTGATTCTGATGCTACTTTTAACAAAGCAACAAGCTTTGTTGCTCTGCAAGGATTGAGCCAATACAATCCTATCAGTTTTGTGGCTAAAGGCACGAACAGGAATTTTCTTTTGCAGCCATTACTCTCATTCAGAGATGAGCATTACACAGTTTATTTCAATATTCAAGATTGA 2559 0.4224 MEAFVFVFVAILLCGCVAAKECTNIPTQSHTFRYELLMSKNATWKAEVMDHYHLTPTDETVWADLLPRKFLSEQNQHDWGVMYRKIKNMGVFKSGEGFLKEVPLQDVRLHKDSIHARAQQTNLEYLLMLDVDSLIWSFRKTAGLSTPGTPYGGWEGPEVELRGHFVGHYLSASALMWASTQNDTLKQKMSSLVAGLSACQEKIGTGYLSAFPSEFFDRFETVQPVWAPYYTIHKILAGLLDQHTFAGNPQALKMVTWMVDYFYNRVQNVITKYTVNRHYESLNEETGGMNDVLYRLYSITGDSKHLVLAHLFDKPCFLGLLAMQANDIANFHANTHIPVVVGSQMRYEITGDPLYKQIGTFFMDLVNSSHSYATGGTSVSEFWSDPKRIADNLRTTENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGFAVSKARTGHSWGTQFDSFWCCYGTGIESFSKLGDSIYFEEEGKDPTLYIIQYIPSSFNWKSGKILLNQTVVPVASSDPYLRVTFTFSPVENTLSTLNFRLPSWTLLDGAKGILNGQTLSLPNPGKYLSVTRQWSGSDKLTLQLPLTVRTEAIKDDRPEYASVQAILYGPYLLAGHTTGGDWDLKAGANNADWITPIPASYNSQLVSFFRDFEGSTFVLTNSNKSVSMQKLPEYGTDLTLQATFRIVLKDSSSKFSTLADANDRSVMLEPFDFPGMNVIHQGAGKPLLIADSSHGGPSSVFLLVPGLDGRNETVSLESQSNKGCYVYSGMSPSSGVKLSCKSDSDATFNKATSFVALQGLSQYNPISFVAKGTNRNFLLQPLLSFRDEHYTVYFNIQD 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01196 852 Pfam Beta-L-arabinofuranosidase, GH127 107 628 IPR012878 -
Gma11g01196 852 Gene3D - 710 835 - -
Gma11g01196 852 SUPERFAMILY AbfB domain 750 832 IPR036195 GO:0046373|GO:0046556
Gma11g01196 852 SUPERFAMILY Six-hairpin glycosidases 148 438 IPR008928 GO:0005975
Gma11g01196 852 PANTHER PROLINE-TRNA LIGASE (DUF1680) 7 851 - -
Gma11g01196 852 PANTHER - 7 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01196 Gma-Chr11 10190782 10196406 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01196 K09955 - gmx:100781521 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01196 11 10190782 10196406 Gma11g01196 11 10190782 10196406 ECH
Gma12g00497 12 4124161 4130405 Gma11g01196 11 10190782 10196406 GST
Gma15g00312 15 2706795 2712339 Gma11g01196 11 10190782 10196406 PCT