Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00351 ATGGGTTGTTTGCATTCCAAAGTAAGGGAATTTCCGGCAGAAGACCCATTTGCTCTAGCATCAGAGACAGCCTTCAGTGTTAATGATGTTGAAGCATTATATGAGCTTTTTAAGAGCATCAGTAGGTCCGTCGTTGATGATGGACTAATAAGTAAGGAAGAATTTCAATTGGCCATTTTCGATAATAAGAAAAAGGATAATCTTTTTACAAGTCGGATCTTTGATTTATTTGATGTTAAGAAAAAGGGAATGATTGACTTTGGTGACTTCGTTAGAGCGCTCAATGTCTTCCACCCATCTGTACCTATAGAAGTCAAGATAGATTTTTCATTTAGGCTCTACGACTTAGACAATACGGGATTTATAGAGCGTCAAGAGGTCGAGCAAATGCTAAATGCACTTCTTTGTGAAGCTGAAATTAAGTTGTCATATGAAATGATAGAAACAATTATTAACAAGACTTTCTTGGATGCCGACCTTAATCAAGATGGAAAAATAGACAAGTCTGAGTGGCTAAACTTTGTTTGTGAAAATCCTTCATTATTAAAAGTCATGACCCTGCCATACCTAAGGGACATAACAACTACTTTTCCAAGTTTTGTATTTCACTCAAAGGCGGAGGATGAAATTGCCGATTAA 639 0.3662 MGCLHSKVREFPAEDPFALASETAFSVNDVEALYELFKSISRSVVDDGLISKEEFQLAIFDNKKKDNLFTSRIFDLFDVKKKGMIDFGDFVRALNVFHPSVPIEVKIDFSFRLYDLDNTGFIERQEVEQMLNALLCEAEIKLSYEMIETIINKTFLDADLNQDGKIDKSEWLNFVCENPSLLKVMTLPYLRDITTTFPSFVFHSKAEDEIAD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00351 212 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Gma11g00351 212 Pfam EF-hand domain pair 106 174 IPR002048 GO:0005509
Gma11g00351 212 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gma11g00351 212 Gene3D - 15 209 - -
Gma11g00351 212 CDD EFh 106 175 IPR002048 GO:0005509
Gma11g00351 212 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Gma11g00351 212 PRINTS Recoverin family signature 73 94 - -
Gma11g00351 212 PRINTS Recoverin family signature 120 138 - -
Gma11g00351 212 PRINTS Recoverin family signature 166 186 - -
Gma11g00351 212 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Gma11g00351 212 ProSiteProfiles EF-hand calcium-binding domain profile. 72 100 IPR002048 GO:0005509
Gma11g00351 212 SUPERFAMILY EF-hand 19 201 IPR011992 -
Gma11g00351 212 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Gma11g00351 212 SMART efh_1 106 134 IPR002048 GO:0005509
Gma11g00351 212 SMART efh_1 150 178 IPR002048 GO:0005509
Gma11g00351 212 SMART efh_1 69 97 IPR002048 GO:0005509
Gma11g00351 212 PANTHER CALCINEURIN B-LIKE PROTEIN 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00351 Gma-Chr11 2811100 2813221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00351 1 211 EF-hand Containing Proteins AT4G17615 73.239 1.36e-110 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00351 K06268 - gmx:100779020 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00351 11 2811100 2813221 Gma11g00351 11 2811100 2813221 ECH
Gma11g00351 11 2811100 2813221 Gma17g01365 17 12562000 12568453 PCT
Gma11g00351 11 2811100 2813221 Gma05g00625 05 6757835 6771391 PCT
Gma17g01365 17 12562000 12568453 Gma11g00351 11 2811100 2813221 PCT
Gma05g00625 05 6757835 6771391 Gma11g00351 11 2811100 2813221 PCT