Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00625 ATGCCTTCCTCCACCCTGTACCAAAAAAAAAAATACCCTCATCACCACCCCTATTCCCGGCGAACCCCACCAGCACCACCACCCTGGAATAGGAGGAGCTCTTCGCGATTCGTGCTCAAAGCTTCCGTCGTGCTCCGATACCCAGGTTCTGCCGTTGTACTCCGATGGTCCAGATCTACCTCTGCTTCTGCAGCAAGCTCAAGAACCCTCCCAACGATCCGTGGATTTTGCCACACTCTTGCGGTGAGGTTTGTGGAAGACCGTTGTGATCGTGCTTTTCAGTGTGGGAATCCGTGTGAGAAGAGGCTTGGTTTCCACCTCCGTCGCCGCACTCACTTTGATGCCAATTTTCTGAACACGCTTTTGAAGAGGGTAAGTTCGAGCACCGGTACTGTGCTGTGCTGCATTACTTGCATTTCCTCTATAATGGGTTGTTTCCACTCTAAGTCAGCGAGGCAGTTTCCTGCACAGGAGAATACTGTTAATCTTGCGGCAGAGACAGCTTTTACTGTCAGTGAGGTTGAAGCACTGTTTGAGCTTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTTGCAAACCGGATCTTTGATTTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGTGGGAAACTTTTGTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGGGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGAGATTACTGCTTAA 1068 0.4429 MPSSTLYQKKKYPHHHPYSRRTPPAPPPWNRRSSSRFVLKASVVLRYPGSAVVLRWSRSTSASAASSRTLPTIRGFCHTLAVRFVEDRCDRAFQCGNPCEKRLGFHLRRRTHFDANFLNTLLKRVSSSTGTVLCCITCISSIMGCFHSKSARQFPAQENTVNLAAETAFTVSEVEALFELFRSISSSVVDDGLISKEEFQLAIFKNKKKDNLFANRIFDLFDVKKKGVIDFEDFVRSLNVFHPNASLEDKIAFSFRLYDLHNTGFIERPEVKQMLIALLFESDMKLADDVIETILDKTFVEADLNQDGKIDTEEWETFVKKNPSLLKIMTLPYLRDITTSFPSFIFNSNVDEITA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00625 355 ProSiteProfiles EF-hand calcium-binding domain profile. 209 244 IPR002048 GO:0005509
Gma05g00625 355 PANTHER CALCINEURIN B 143 354 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gma05g00625 355 CDD EFh 250 315 IPR002048 GO:0005509
Gma05g00625 355 PANTHER BNAC07G34450D PROTEIN 143 354 - -
Gma05g00625 355 PRINTS Recoverin family signature 217 238 - -
Gma05g00625 355 PRINTS Recoverin family signature 264 282 - -
Gma05g00625 355 PRINTS Recoverin family signature 310 330 - -
Gma05g00625 355 ProSitePatterns EF-hand calcium-binding domain. 303 315 IPR018247 -
Gma05g00625 355 SUPERFAMILY EF-hand 163 343 IPR011992 -
Gma05g00625 355 Pfam EF-hand domain pair 249 319 IPR002048 GO:0005509
Gma05g00625 355 ProSiteProfiles EF-hand calcium-binding domain profile. 246 281 IPR002048 GO:0005509
Gma05g00625 355 SMART efh_1 213 241 IPR002048 GO:0005509
Gma05g00625 355 SMART efh_1 294 322 IPR002048 GO:0005509
Gma05g00625 355 SMART efh_1 250 278 IPR002048 GO:0005509
Gma05g00625 355 MobiDBLite consensus disorder prediction 1 31 - -
Gma05g00625 355 ProSiteProfiles EF-hand calcium-binding domain profile. 290 325 IPR002048 GO:0005509
Gma05g00625 355 Gene3D - 160 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00625 Gma-Chr5 6757835 6771391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00625 143 354 EF-hand Containing Proteins AT4G17615 77.830 1.11e-118 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00625 K06268 - gmx:100527380 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01365 17 12562000 12568453 Gma05g00625 05 6757835 6771391 GST
Gma11g00351 11 2811100 2813221 Gma05g00625 05 6757835 6771391 PCT
Gma05g00625 05 6757835 6771391 Gma11g00351 11 2811100 2813221 PCT