Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00233 ATGGCCGTCACGAAAAGCCTCTCCATCTTCCTCTTCATCGCCATAAGCTGCGTGGCCGTAGCTCAGGCAGCGAACTTCAACATCACAAACAATTGCACCTACACGGTGTGGGCCGCCGCCGTGCCCGGCGGCGGCTCAAGGCTTAACCCTGGCGAATCGTGGAACATCAGCGTGACGAACGGCACGACAGGAGGACGCATCTGGGGTCGAACAAACTGCACCTTCGACAACGCAGGACGCGGGAAGTGCCTCACCGGCGACTGCGACGGTGTTCTTGAGTGCAACAAAACAGGTACACCTCCGAACACGTTGGTGGAATTCGCGTTGAACCAGTACAACAACCTCGACTTCTACGACATCTCCCTCGTCGACGGTTTCAACATTCCCTTGCAGGTGAGCCCGACCTACAACTGCAGCTCCGTGAAATGCGCCGCCGACATCATCGGAGAGTGTCCCACTCAGCTTCAGGTTCCCGGCGGCTGCAACAACCCGTGCACGGTTTTCAATACGACTCAGTACTGTTGTAGCACCGGTGCTGCGGGTTGCGGTCCCACTGATTATTCCAAGTTCTTCAAGGAGAGGTGTCCAGATGCCTTTAGTTACCCTATGGATGACGCAAGCAGCATGTTCACTTGCATGGGAGGATCTGATTATAGGCTTGTGTTTTGCCCTTAA 675 0.5556 MAVTKSLSIFLFIAISCVAVAQAANFNITNNCTYTVWAAAVPGGGSRLNPGESWNISVTNGTTGGRIWGRTNCTFDNAGRGKCLTGDCDGVLECNKTGTPPNTLVEFALNQYNNLDFYDISLVDGFNIPLQVSPTYNCSSVKCAADIIGECPTQLQVPGGCNNPCTVFNTTQYCCSTGAAGCGPTDYSKFFKERCPDAFSYPMDDASSMFTCMGGSDYRLVFCP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00233 224 ProSiteProfiles Thaumatin family profile. 23 224 IPR001938 -
Gma11g00233 224 PANTHER OS03G0233200 PROTEIN 1 224 IPR001938 -
Gma11g00233 224 Pfam Thaumatin family 30 224 IPR001938 -
Gma11g00233 224 SUPERFAMILY Osmotin, thaumatin-like protein 24 224 IPR037176 -
Gma11g00233 224 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 1 224 - -
Gma11g00233 224 PIRSF PR5 1 224 IPR001938 -
Gma11g00233 224 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gma11g00233 224 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Gma11g00233 224 SMART tha2 26 224 IPR001938 -
Gma11g00233 224 Gene3D Thaumatin 23 224 IPR037176 -
Gma11g00233 224 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Gma11g00233 224 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Gma11g00233 224 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Gma11g00233 224 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Gma11g00233 224 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Gma11g00233 224 PRINTS Pathogenesis-related protein signature 214 223 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00233 Gma-Chr11 1825911 1827349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00233 6 224 Receptor kinase-like Gene Family AT5G38280 38.211 2.65e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00233 - - gmx:100037479 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00233 11 1825911 1827349 Gma11g00233 11 1825911 1827349 ECH
Gma01g02181 01 57094737 57095412 Gma11g00233 11 1825911 1827349 GST
Gma11g00233 11 1825911 1827349 Gma05g02004 05 41409601 41410466 PCT