Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02181 ATGGCCGTCACGAAAAGCCTCTCAATCTTCCTCTTCATCGCAATGAGCTGCGTCGCCGCAGCTCAGGCAGCGAACTTCAACATCACAAATAACTGCACCTACACGGTGTGGGCCGCTGCCGTGCCCGGCGGCGGCGCAAGGCTTAACCCTGGCGAATCGTGGAACATCAGCGTGACGAACGGCACAACAAGAGGACGCATCTGGGGTCGAACAAACTGCACCTTCGACAACGCGGGACGCGGGAAGTGCCTCACCGGCGACTGCGAGGGTGTTCTGGAGTGCAACAAAACAGTTCCGTTAAATGCGCCGCCGACATCATCGGAGAGTGCCCCACTCAGCTCCAGGTTCCTGGCGGCTGCAACAACCCCTGCACGGTTTTCAATACGACTCAGTACTGTTGTAGCACCGGAGCTGCTGGGTGCGGTCCCACAGATTATTCCAAGTTCTTCAAGGAGAGGTGCCCTGATGCCTACAGTTACCCTATGGACGATGCAACCAGCATGTTCACTTGCATGGGATCCGATTATAGGGTTGTGTTTTGCCCTTAATTAA 552 0.5598 MAVTKSLSIFLFIAMSCVAAAQAANFNITNNCTYTVWAAAVPGGGARLNPGESWNISVTNGTTRGRIWGRTNCTFDNAGRGKCLTGDCEGVLECNKTVPLNAPPTSSESAPLSSRFLAAATTPARFSIRLSTVVAPELLGAVPQIIPSSSRRGALMPTVTLWTMQPACSLAWDPIIGLCFALN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02181 183 PANTHER OS03G0233200 PROTEIN 1 98 IPR001938 -
Gma01g02181 183 ProSiteProfiles Thaumatin family profile. 23 106 IPR001938 -
Gma01g02181 183 SMART tha2 26 137 IPR001938 -
Gma01g02181 183 Gene3D Thaumatin 23 116 IPR037176 -
Gma01g02181 183 SUPERFAMILY Osmotin, thaumatin-like protein 24 106 IPR037176 -
Gma01g02181 183 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Gma01g02181 183 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Gma01g02181 183 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Gma01g02181 183 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Gma01g02181 183 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gma01g02181 183 Pfam Thaumatin family 30 106 IPR001938 -
Gma01g02181 183 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Gma01g02181 183 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02181 Gma-Chr1 57094737 57095412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02181 6 106 Receptor kinase-like Gene Family AT5G38280 37.838 2.18e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02181 - - gmx:100037479 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02181 01 57094737 57095412 Gma11g00233 11 1825911 1827349 GST
Gma01g02181 01 57094737 57095412 Gma05g02004 05 41409601 41410466 PCT