Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02004 ATGGCGGCTCTCAGAAAAGCCGTGTTCTTTGTAATCGCTCAATGCTTCACCTTTTCCGCATATGCTGCAAGGTTTGAAATCACAAACCGATGCACATACACTGTCTGGGCTGCGTCTGTGCCTGTTGGCGGTGGCGTGCAATTAAACCCGGGCCAGTCATGGTCCGTGGACGTGCCTGCAGGAACGAAAGGGGCCCGCGTTTGGGCCCGAACCGGCTGCAACTTCGACGGTTCGGGCCGCGGTGGATGCCAGACCGGTGACTGCGGGGGTGTCCTCGACTGCAAAGCTTACGGTGCGCCTCCCAACACCCTGGCTGAATACGGCCTGAACGGGTTCAACAATTTGGACTTCTTCGACATCTCCCTCGTGGACGGTTTTAACGTGCCCATGGACTTTAGTCCAACCTCGAATGGATGCACACGTGGCATAAGGTGCACTGCGGACATTAACGGACAGTGCCCTAGTCAGCTAAAGACTCAAGGAGGTTGCAACAACCCTTGCACTGTCTTCAAAACCGACCAGTACTGTTGCAATTCCGGTAGCTGTGGGCCCACTGATTATTCCAGATTCTTCAAGCAAAGGTGCCCCGATGCTTATAGTTACCCCAAGGATGATCCAACTAGCACCTTCACTTGTAATGGTGGGACTGACTATAGGGTTGTCTTTTGTCCTTGA 675 0.5378 MAALRKAVFFVIAQCFTFSAYAARFEITNRCTYTVWAASVPVGGGVQLNPGQSWSVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAYGAPPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSPTSNGCTRGIRCTADINGQCPSQLKTQGGCNNPCTVFKTDQYCCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPTSTFTCNGGTDYRVVFCP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02004 224 Gene3D Thaumatin 23 224 IPR037176 -
Gma05g02004 224 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Gma05g02004 224 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Gma05g02004 224 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Gma05g02004 224 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Gma05g02004 224 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Gma05g02004 224 PRINTS Pathogenesis-related protein signature 214 223 IPR001938 -
Gma05g02004 224 PANTHER THAUMATIN-RELATED 8 224 - -
Gma05g02004 224 Pfam Thaumatin family 29 224 IPR001938 -
Gma05g02004 224 ProSiteProfiles Thaumatin family profile. 22 224 IPR001938 -
Gma05g02004 224 CDD TLP-P 25 224 - -
Gma05g02004 224 PIRSF PR5 1 224 IPR001938 -
Gma05g02004 224 SUPERFAMILY Osmotin, thaumatin-like protein 23 224 IPR037176 -
Gma05g02004 224 SMART tha2 25 224 IPR001938 -
Gma05g02004 224 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Gma05g02004 224 PANTHER OS03G0233200 PROTEIN 8 224 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02004 Gma-Chr5 41409601 41410466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02004 8 224 Receptor kinase-like Gene Family AT5G38280 35.802 9.38e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02004 - - gmx:100804547 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02004 05 41409601 41410466 Gma05g02004 05 41409601 41410466 ECH
Gma01g02181 01 57094737 57095412 Gma05g02004 05 41409601 41410466 PCT
Gma11g00233 11 1825911 1827349 Gma05g02004 05 41409601 41410466 PCT