Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00156 ATGGCATCGCGCGTCAGCATTGGCAATCTCACTTCCTCCGCGCCGTATATTAATTCCCCTCATTTTCGCTCACAACTTAAGCTTTCCAGCAACTCCTCTTTGCACAAGCCACTCATGCGCGACAAGACTGTGCTGGTAACCGGCGGAGCCGGTTACATCGGCACCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTGCAGAACCGTCGTCGTCGACAATCTCGACAATTCCTCCGAGGTTTCTATCCACCGAGTCAGGGAGCTTGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGgtggacctacgggacagggatgcactagagcaaatttttgtttccacacaATTTGATGCTGTCATACACTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCGGTTGTATTGGGGAGGATCCCCGCGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGCGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGAGATCAGGAGGATTCCACCGTTTAA 1167 0.4447 MASRVSIGNLTSSAPYINSPHFRSQLKLSSNSSLHKPLMRDKTVLVTGGAGYIGTHTVLQLLLGGCRTVVVDNLDNSSEVSIHRVRELAGEFGNNLSFHKVDLRDRDALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHRAEPDWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTTDGTGVRDYIHVVDLADGHIAALLKLDDPNIGCEVYNLGTGKGTSVLEMVRAFEMASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQEDSTV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00156 388 Pfam GDP-mannose 4,6 dehydratase 45 368 IPR016040 -
Gma11g00156 388 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 39 382 - -
Gma11g00156 388 PRINTS Nucleotide sugar epimerase signature 70 86 - -
Gma11g00156 388 PRINTS Nucleotide sugar epimerase signature 274 289 - -
Gma11g00156 388 PRINTS Nucleotide sugar epimerase signature 300 315 - -
Gma11g00156 388 PRINTS Nucleotide sugar epimerase signature 339 356 - -
Gma11g00156 388 CDD UDP_G4E_1_SDR_e 43 372 IPR005886 GO:0003978|GO:0006012
Gma11g00156 388 Gene3D - 232 373 - -
Gma11g00156 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 380 IPR036291 -
Gma11g00156 388 Gene3D - 44 313 - -
Gma11g00156 388 TIGRFAM galE: UDP-glucose 4-epimerase GalE 44 378 IPR005886 GO:0003978|GO:0006012
Gma11g00156 388 PANTHER UDP-GLUCOSE 4-EPIMERASE 39 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00156 Gma-Chr11 1191428 1195847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00156 40 357 Miscellaneous Gene Families AT4G00110 27.679 6.51e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00156 K01784 - gmx:100792137 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00156 11 1191428 1195847 Gma11g00156 11 1191428 1195847 ECH
Gma01g02261 01 57780317 57784639 Gma11g00156 11 1191428 1195847 GST
Gma11g00156 11 1191428 1195847 Gma05g02114 05 42371755 42376375 PCT
Gma11g00156 11 1191428 1195847 Gma08g00220 08 1890894 1894913 PCT