Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02261 ATGGCATCGCGCGTCAGCATTGGCAACCTTACCTCCTCCGCGCCGTATATTAATTCCCCTCACTTTCGCTCACCACTTAAGATTTCCAACAACCCCTCTCTGCAAAACGCTTCGCATAAGGTACTTATGCGCGATAAGACTGTACTGGTAACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTTCAGAGCCGTCGTCCTCGACAACCTCGAAAATTCCTCCGAGGTTGCCATCCACAGAGTCAGGGAGCTCGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGAGCTGCTCTAGACCAAATATTTTCTTCCACACAATTCGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGTAAAATAATTTTGTTAAGATACTTCAACCCAGTTGGTGCACACCCCAGTGGTTATATTGGGGAGGATCCTCGTGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGAGATCAGGGCTCCACCGATTAA 1176 0.4592 MASRVSIGNLTSSAPYINSPHFRSPLKISNNPSLQNASHKVLMRDKTVLVTGGAGYIGSHTVLQLLLGGFRAVVLDNLENSSEVAIHRVRELAGEFGNNLSFHKVDLRDRAALDQIFSSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHCAEPDCKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTSDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVRAFEMASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQGSTD 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02261 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 43 385 - -
Gma01g02261 391 TIGRFAM galE: UDP-glucose 4-epimerase GalE 48 382 IPR005886 GO:0003978|GO:0006012
Gma01g02261 391 CDD UDP_G4E_1_SDR_e 47 376 IPR005886 GO:0003978|GO:0006012
Gma01g02261 391 PRINTS Nucleotide sugar epimerase signature 74 90 - -
Gma01g02261 391 PRINTS Nucleotide sugar epimerase signature 278 293 - -
Gma01g02261 391 PRINTS Nucleotide sugar epimerase signature 304 319 - -
Gma01g02261 391 PRINTS Nucleotide sugar epimerase signature 343 360 - -
Gma01g02261 391 Gene3D - 236 377 - -
Gma01g02261 391 Gene3D - 48 317 - -
Gma01g02261 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 43 385 - -
Gma01g02261 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 384 IPR036291 -
Gma01g02261 391 Pfam GDP-mannose 4,6 dehydratase 49 372 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02261 Gma-Chr1 57780317 57784639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02261 44 361 Miscellaneous Gene Families AT4G00110 27.761 3.23e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02261 K01784 - gmx:100818509 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02261 01 57780317 57784639 Gma01g02261 01 57780317 57784639 ECH
Gma01g02261 01 57780317 57784639 Gma11g00156 11 1191428 1195847 GST
Gma01g02261 01 57780317 57784639 Gma05g02114 05 42371755 42376375 PCT
Gma01g02261 01 57780317 57784639 Gma08g00220 08 1890894 1894913 PCT