Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00220 ATGCCTGCCCCATTGATTCTGGTTACTGGCGGAGCCGGTTACATCGGTAGCCACACCATCCTTCAGCTTCTCTTCGGCGGTTACCATGTCTTCGCCGTCGACAACTTCGACAATTCTTCCGAAACCGCCATCAACAGAGTCAAGGAACTCGCCGGAGAATTAGCAAATAACCTTTCCTTTTGCAAGCTTGACTTGCGGGACAGAGCTGCCCTCGAGAAAATATTTTCAACCGTAAAGTTTGATGCCGTCATACATTTTGCTGGGCTTAAAGCAGTGGGTGAAAGCGTGAAGAAACCACTGCTCTACTTTGACAACAATTTGATAGGGACAATCGTTCTATTTGAAGTCATGGCTGCCCACGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGGTGGCCAAAGGAGGTCCCATGTACCGAAGAGTTCCCTTTGTCAGCAACAAACCCATATGGACGAACCAAGCTTTTCATCGAAGAAATTTGTCGCGATATCCACCGTGCAGATTCAGATTGGACAGTTATACTATTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTGGTTATATTGGTGAGGATCCTCTTGGAATTCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAGAAAATTCCACTTGCAATGGCGGGTCGGAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAGAAAAAGCGGAAAGAGAACTTAAATGGAAGACTAAATATTGCATCGATGATATGTGCCGAGATCAATGGAATTGGGCAAGGAAAAACCCTTATGGCTATGGTGGATCTGAAGATTCCTCCAATTGA 1053 0.4492 MPAPLILVTGGAGYIGSHTILQLLFGGYHVFAVDNFDNSSETAINRVKELAGELANNLSFCKLDLRDRAALEKIFSTVKFDAVIHFAGLKAVGESVKKPLLYFDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSATNPYGRTKLFIEEICRDIHRADSDWTVILLRYFNPVGAHPSGYIGEDPLGIPNNLMPFVQQVAVGRRPALTVFGSDYKTTDGTGVRDYIHVLDLADGHIAALRKLDDPKIGCEVYNLGTGKGTSVLEMVNAFEQASGKKIPLAMAGRRPGDAEIVYASTEKAERELKWKTKYCIDDMCRDQWNWARKNPYGYGGSEDSSN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00220 350 Gene3D - 194 335 - -
Gma08g00220 350 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
Gma08g00220 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 341 IPR036291 -
Gma08g00220 350 PANTHER BNAA01G13540D PROTEIN 6 349 - -
Gma08g00220 350 PRINTS Nucleotide sugar epimerase signature 32 48 - -
Gma08g00220 350 PRINTS Nucleotide sugar epimerase signature 236 251 - -
Gma08g00220 350 PRINTS Nucleotide sugar epimerase signature 262 277 - -
Gma08g00220 350 PRINTS Nucleotide sugar epimerase signature 301 318 - -
Gma08g00220 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Gma08g00220 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 6 349 - -
Gma08g00220 350 CDD UDP_G4E_1_SDR_e 6 334 IPR005886 GO:0003978|GO:0006012
Gma08g00220 350 Gene3D - 6 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00220 Gma-Chr8 1890894 1894913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00220 6 319 Miscellaneous Gene Families AT4G00110 27.964 1.72e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00220 K01784 - gmx:100809394 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00220 08 1890894 1894913 Gma08g00220 08 1890894 1894913 ECH
Gma05g02114 05 42371755 42376375 Gma08g00220 08 1890894 1894913 GST
Gma01g02261 01 57780317 57784639 Gma08g00220 08 1890894 1894913 PCT
Gma11g00156 11 1191428 1195847 Gma08g00220 08 1890894 1894913 PCT