Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00535 ATGTTCAAGAAAATCATGAAAGGCGGGCACAAGAAGCCCGCTAAGTCCGACGCCAGCGATCCGGTTCCGCCGCCGTACGCCGCCGCCAACCGTAGCGCTCCGGCGGCTCCCTCCGCCAATGCCGTCTCCAACCACGCCTCGCGCATCTCCTCGACCCCGCTGACACTCTCTTCCGGCGGCTCCATCGAGCCGGTGCCGCTGTTCCGCGACGCTCCTGTCGCGGAACGCCAGAACCTCTTCCTCCGGAAGCTCCACGTGTGCTGCTACGTCCTCGACTTCTCCGACACGCTGAAGAACGTTAGGGAGAAAGAAATCAAACGCCAGGCGCTCATGGACCTCGTCGATTTCATCCAATCCGGTTCCGGCAAGATAAACGAGAATTGCCAGGAAGAGATGATCAGGATGATCTCCGTCAACATTTTCCGGTGCCTCCCTCCGGCGTCGCACGAAAACACCGGCCAAGAACCCACCGATCCCGAGGAAGAAGAACCTTCCTTGGACCCTTCCTGGCCCCACCTTCAGCTCGTCTACGAACTTCTCCTCAGATACATTGTTTCCTCCGACACCGATACGAAAATCGCGAAACGGTACATCGATCACTCCTTCGTTCTTAAATTGCTCGATTTGTTTGACTCTGAGGACCCGCGCGAGAGAGAGTATTTGAAAACCATACTGCATCGTATATACGGGAAATTCATGGTGCATAGGCCCTTTATTAGGAAAGCTATTAACAACATTTTTTACCGGTTTATATATGAGACTGAGAGACACTCTGGCATTGGGGAGCTTCTGGAGATTCTCGGCAGCATTATTAATGGGTTTGCCTTGCCCATGAAGGAGGAGCACAAGTTGTTTCTTGTGAGGGCGCTTCTGCCTCTGCATAAGCCGAAATCGGTGGGGATGTATCATCAGCAGTTGTCTTACTGCATTACTCAGTTTGTGGAGAAGGATTTCAAGCTCGCCGATACGGTGATCAGGGGGTTGTTGAAGTATTGGCCGGTTACTAATTGCCAGAAGGAGGTTCTCTTCCTTGGAGAACTTGAGGAGGTGCTGGAGGCCACGCAGGCCGCGGAGTTTCAACGTTGCATGGTTCCTCTTTTTAGACAGATTTCGCGCTGCCTCAATAGCTCTCACTTTCAGGTTCCAGAACGAGCCCTCTTCTTGTGGAATAACGAGCATATTGTGAGCTTAATTGCCCAAAACAGGACTGTGATACTACCGATAATATTTGAAGCATTTGAGAAAAATATTTCGAGTCATTGGAATCAGGCAGTGCATGGACTGACCGTGAATGTTCGCAAAATGTTCCTGGAAATGGACGCAGAATTGTTTGAAGAGTGCCAGCGGAAGCATGCAGAGAAAGAGGCTAAAGTCAAAGAACTAGCAGAGCAGCGGGAACTTAATTGGAAGAGACTGGCAGATGTGGCTGCACAGAACGGAGTGGAGGACATGGTCACTTAG 1461 0.5147 MFKKIMKGGHKKPAKSDASDPVPPPYAAANRSAPAAPSANAVSNHASRISSTPLTLSSGGSIEPVPLFRDAPVAERQNLFLRKLHVCCYVLDFSDTLKNVREKEIKRQALMDLVDFIQSGSGKINENCQEEMIRMISVNIFRCLPPASHENTGQEPTDPEEEEPSLDPSWPHLQLVYELLLRYIVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSVGMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQISRCLNSSHFQVPERALFLWNNEHIVSLIAQNRTVILPIIFEAFEKNISSHWNQAVHGLTVNVRKMFLEMDAELFEECQRKHAEKEAKVKELAEQRELNWKRLADVAAQNGVEDMVT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00535 486 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 66 476 IPR002554 GO:0000159|GO:0007165|GO:0019888
Gma10g00535 486 Gene3D - 72 475 IPR011989 -
Gma10g00535 486 SUPERFAMILY ARM repeat 77 457 IPR016024 -
Gma10g00535 486 PIRSF PP2A_B56 4 485 IPR002554 GO:0000159|GO:0007165|GO:0019888
Gma10g00535 486 Coils Coil 444 464 - -
Gma10g00535 486 MobiDBLite consensus disorder prediction 148 167 - -
Gma10g00535 486 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 481 - -
Gma10g00535 486 MobiDBLite consensus disorder prediction 1 44 - -
Gma10g00535 486 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 481 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00535 Gma-Chr10 5521990 5529229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00535 K11584 - gmx:100795277 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00535 10 5521990 5529229 Gma10g00535 10 5521990 5529229 ECH
Gma10g00535 10 5521990 5529229 Gma13g01249 13 26800747 26808715 GST
Gma19g01753 19 46836829 46843312 Gma10g00535 10 5521990 5529229 PCT
Gma03g01700 03 43180744 43186282 Gma10g00535 10 5521990 5529229 PCT
Gma10g00535 10 5521990 5529229 Gma19g01753 19 46836829 46843312 PCT
Gma10g00535 10 5521990 5529229 Gma03g01700 03 43180744 43186282 PCT