Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00252 ATGGTGGGCCCCTCCAGCGCCAGCGGGCGTAGGGAAGTTAGAATCGCCGTCGTGGGCGATGGAGCCACCGGAAAATCCACACTCATAGCCGCAATGGCATCGGAGTCTTTCCCCAAGTCCGTTCCGCCCGTGCTTCCCCCCACTCGCTTGCCCCGCAATCTCTTCCCCGATTCCGTTCCTCTTACCCTCATCGACACACCTTCCAGCTTGGCAAAACAAGGCACACGCAATGAAGAATTGAAGCTAGCTGATACAGTGGTTTTAACCTATGCTTGTGATGAACCGGTGAGCTTTGAGCGTGTGACTACTTACTGGCTCCCTGAATTGCACAAGTTGGAGGTGAAGGCACCTGTGATTGTGGTCGGTTGCAAGCTTGACCTGCGGGATGAAAACCAGCTAGTGAGCTTAGAGAGTCTCACCACTCACATAATGAAACAGTTTACTGAAGTTGTCACCTGTGTTGAATGCTCTGCAGCTACACTCTATCAGGTCCCACAAGTTTTTTATTTTGCCCAAAAAGCAGTACTGCATCCAGTAGATCCATTGTTTGATTATGAAAGACATGCTTTAACAGATCGATGTGTGAGGGCGTTAAGAAGAATATTTGTTCTTTGTGATCATGACATGGATGGTGCCCTCAATGATGAAGAACTCAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAACCATTTGAAGTAGCAAATATCAAAACAATTGTAGAGCAGAAAGTACCTGAAGGAGTCAACTCTATTGGTCTTACCTTTCCAGGCTTTATTTATGTCCATAATTTGTTTCTAAAGAAAGGGAGAACAGAGACATTATGGGCTGTTCTAAGAAAGTTTGAATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCTGTTCCATCCAAGCAGGCTTCTGATCAGAGTGTGGAGCTGACAAGTGAAGCCGTAGAGTTTCTGAATGGTATCTTTCGATTGTTAGATACAGATAAAGATCGATACCTACGACCTGCTGAAGTTGATAAGCTATTTGATATTGCTCCGGAAAGTCCATGGAACGATGCTCCATATAAGGATGCAGCAGAGAAGACTGATATGGGCTATATCTCTCTAAATGGATTTCTGTCTCAGTGGGCCCTCATGACATTACTTGATCCAAAACGTAGCTTGGCAAATTTGATTTACATTGGATATAATGGCAATCCTGCTGAAGCACTCCGTGTCACTCGTAGAAGATCAGTAGATCGCAAGAAGCAAACAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCGAAACATGCTGGGAAATCTGCTTTGATGTATTCATTACTGGGAAGGCCTTTCTCAAATAATTATACTCCAACAACAGTTGAGCAGTATGCGGCAAATGTCATTGAACTAAAAGGGGTAACTAGGAAAATTCTCATATTGCGTGAGATACCTGAGGATGGACTATTGCAATTTTTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGTTAGACAAGGAGAACTAACTGGTTATAGAACCCCTTGTCTCCTTATCGCTGCTAAGGATGATTTAGCTCCAGTCCCAAGGACAGTACTAGATTCAGTTAAGGTTACTCAGGCATTGGGAATAAAGGCACCTATTCACGTAAGTATGAAGTTAGGTGATTCAAGTAATGTGTATAATAAAATTGTTAATGCTGCAGAACACCCTCATTTGAGCATTCCAGAAACTGAGACTGCACGGAGAAAGAAGCAACACAACCAGCTTCTTCATCACTCTCTTATTTTTGCCTTAGTTGGGGCTGCTATGGCGGTTGCCGGTTTGACAGCTTGTCGTGTGCGTGCAGTGAAGAAGAATACTGCTGCTTAA 1932 0.4332 MVGPSSASGRREVRIAVVGDGATGKSTLIAAMASESFPKSVPPVLPPTRLPRNLFPDSVPLTLIDTPSSLAKQGTRNEELKLADTVVLTYACDEPVSFERVTTYWLPELHKLEVKAPVIVVGCKLDLRDENQLVSLESLTTHIMKQFTEVVTCVECSAATLYQVPQVFYFAQKAVLHPVDPLFDYERHALTDRCVRALRRIFVLCDHDMDGALNDEELNEFQVRCFNAPLQPFEVANIKTIVEQKVPEGVNSIGLTFPGFIYVHNLFLKKGRTETLWAVLRKFEYDNDLKLRDDFLPVPSKQASDQSVELTSEAVEFLNGIFRLLDTDKDRYLRPAEVDKLFDIAPESPWNDAPYKDAAEKTDMGYISLNGFLSQWALMTLLDPKRSLANLIYIGYNGNPAEALRVTRRRSVDRKKQTTERNVFQCYVFGSKHAGKSALMYSLLGRPFSNNYTPTTVEQYAANVIELKGVTRKILILREIPEDGLLQFLSNQDCLAACDVAVFVYDSSDEYSWKKSRDLLEKVVRQGELTGYRTPCLLIAAKDDLAPVPRTVLDSVKVTQALGIKAPIHVSMKLGDSSNVYNKIVNAAEHPHLSIPETETARRKKQHNQLLHHSLIFALVGAAMAVAGLTACRVRAVKKNTAA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00252 643 SUPERFAMILY EF-hand 181 377 IPR011992 -
Gma10g00252 643 Pfam EF hand associated 350 417 IPR013566 -
Gma10g00252 643 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Gma10g00252 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Gma10g00252 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Gma10g00252 643 PANTHER MITOCHONDRIAL RHO GTPASE 1 492 - -
Gma10g00252 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
Gma10g00252 643 Gene3D - 185 289 - -
Gma10g00252 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Gma10g00252 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Gma10g00252 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Gma10g00252 643 Gene3D - 291 481 - -
Gma10g00252 643 CDD Miro2 420 599 - -
Gma10g00252 643 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Gma10g00252 643 Pfam Ras family 428 547 IPR001806 GO:0003924|GO:0005525
Gma10g00252 643 Gene3D - 488 588 IPR027417 -
Gma10g00252 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Gma10g00252 643 Pfam EF hand associated 229 313 IPR013567 -
Gma10g00252 643 PANTHER RHO FAMILY GTPASE 1 492 IPR003578 GO:0005525|GO:0007264
Gma10g00252 643 SMART rab_sub_5 13 164 - -
Gma10g00252 643 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Gma10g00252 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 210 IPR027417 -
Gma10g00252 643 PIRSF Miro 9 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Gma10g00252 643 Gene3D - 9 180 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00252 Gma-Chr10 2308205 2317529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00252 3 640 EF-hand Containing Proteins AT3G63150 58.621 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00252 K07870 - gmx:100806983 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00252 10 2308205 2317529 Gma02g01346 02 15609484 15620250 GST
Gma19g01473 19 43963005 43971837 Gma10g00252 10 2308205 2317529 PCT
Gma03g01410 03 40258858 40267714 Gma10g00252 10 2308205 2317529 PCT
Gma10g00252 10 2308205 2317529 Gma19g01473 19 43963005 43971837 PCT
Gma10g00252 10 2308205 2317529 Gma03g01410 03 40258858 40267714 PCT