Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01346 ATGGTTGGTGTACTTGAGTCGATTAAGTTTGAGTTTCTTGGGTACGCCCCTCTAGCGCCGGCGGCCGTAGGGAAGTTAGAATCGCCGTCGTGGGCGACGGAGCCTTTCCCCAAGTCCGTTCCGCCCGTGCTGCCCCCTACTCGCTTGCCCCATAATCTCTTCCCCGATTCCGTTCCTCTTACCCTCATTGAGTCACCTTCCAGCTTGGCAAAACAAGGCGCGCGCAATGAAGAATTGAAGCGAGCTGATGCGGTGGTTTTAACCTATGCTTGTGATGAACCGGTGAGCTTTGAGCGTGTGATTACTTACTGGCTCCCTGAATTGCAGAAGTTGGAGGTGAAGGTGCCTGTGATTGTGGTTGGTTGCAAGCTTGACCTGCGGGATGAAAACCAGCTAGTGAGCTTAGAGAGTCTCACCACTCATATAATGAAACATTTCATTGAAGTTGTCACCTGTGTTGAGTGCTCTGCAGCTACACTTTATCAGGTCCCTCAAGTTTTTTATTTTGCCCAAAAAGAAGTACTGCATCCAGTAGATCCATTGTTTGATTATAAAAGGCATGCTTTAACAGATCCATGTGTGAGGGCATTAAGAAGAATATTTGTTCTTTGTGATCATGACATGGATGGTGCCCTCAATGATGAAGAACTAAACGAGTTTCTGGTTAGATGCTTCAGTGCACCATTGCAGCCTTCTGAAATAGCAGAAGTCAAAACAATTGTAGAGCAGAAAGTACCTGAAGGAGTCAACTCTATTGGTCTTACATTTCCAGGGTTTATTTATGTCCATAATATGTTTCTAAAGAAAGGGCAAACAGAGACATTGTGGGCTGTTCTAAGAAAGTTTGGATACGATAATGATTTAAAACTCTGGGATGATTTCCTTCCAGTTCCATCTAAGCAGGCTTCTGATCAGGATCGATCCCTACGACCTGCTGAAGTTGATAAGCTATTTGATACTGCTCCAGAAAGTCCATGGAACGATGCTCCATATAAGGATGCAGCAGAGAAGACTGATATGGGCTATATCTCTCTGAACGGATTTCTGTCTCAGTTGGAAATTGTTTTTTTATTGATATATCTTTTAAATTGTTTCTTGTTATGGGCCCTCAAGACATTACTTGAACCACAACGTAGCTTGGCTAATTTGATTGACATTGGATATAACGGCAATCCTACTGCAGCACTCCGTGTCACTCATAGAAGATCAGTAGATCACAAGAAGCAAACAACAGAAAAAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAACATGCTGGGAAATCTGCTTTGCTGTATTCATTACCTGGGAAGTATGCGGCAAATGTCATTGAACTAAAAGGGGTAACTAGGAAAATTCTCATATTGCACGAGATACCTGAGGATGGACTATTGCAATTTTTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTAGCTGTTTTCTGCGGGACATATTTTGTGGTTTTACTACTGGATGTTTTATGTTGGGTCCATGGATGGAATAAATTTCCCCAGTCTAAGTACTCAGATGAATCTTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGTTAGACAAGGAGAACTAACTGGTTATAGAACCCCTTGCCTCCTTATCGCTGCTAAGGATGATTTAGCTCCATTCCCAAGGACAGTACTAGATTCGGTTAAGGTTACTCAGGCACTGGGAGTATTCACAACACCCTCATTTGAGCATTCCAGAACTCAGACTGCACAGAGAAAGAAGCAACACCACCAGCTTCTTCACCACTCTCTTATTTTTGCCTTAGTTGGGGCTGCTATGGCAGTTGCCGGTTTGACAGCTTGTCGTGTGCGTGCAGTGAAGAAGAATACTACTGCTTAA 1869 0.4323 MVGVLESIKFEFLGYAPLAPAAVGKLESPSWATEPFPKSVPPVLPPTRLPHNLFPDSVPLTLIESPSSLAKQGARNEELKRADAVVLTYACDEPVSFERVITYWLPELQKLEVKVPVIVVGCKLDLRDENQLVSLESLTTHIMKHFIEVVTCVECSAATLYQVPQVFYFAQKEVLHPVDPLFDYKRHALTDPCVRALRRIFVLCDHDMDGALNDEELNEFLVRCFSAPLQPSEIAEVKTIVEQKVPEGVNSIGLTFPGFIYVHNMFLKKGQTETLWAVLRKFGYDNDLKLWDDFLPVPSKQASDQDRSLRPAEVDKLFDTAPESPWNDAPYKDAAEKTDMGYISLNGFLSQLEIVFLLIYLLNCFLLWALKTLLEPQRSLANLIDIGYNGNPTAALRVTHRRSVDHKKQTTEKNVFQCYVFGSKHAGKSALLYSLPGKYAANVIELKGVTRKILILHEIPEDGLLQFLSNQDCLAACDVAVFCGTYFVVLLLDVLCWVHGWNKFPQSKYSDESSWKKSRDLLEKVVRQGELTGYRTPCLLIAAKDDLAPFPRTVLDSVKVTQALGVFTTPSFEHSRTQTAQRKKQHHQLLHHSLIFALVGAAMAVAGLTACRVRAVKKNTTA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01346 622 ProSiteProfiles Miro domain profile. 9 176 IPR020860 GO:0003924|GO:0005525
Gma02g01346 622 Pfam EF hand associated 367 409 IPR013566 -
Gma02g01346 622 PANTHER RHO FAMILY GTPASE 32 475 IPR003578 GO:0005525|GO:0007264
Gma02g01346 622 Gene3D - 299 460 - -
Gma02g01346 622 Pfam Ras family 76 175 IPR001806 GO:0003924|GO:0005525
Gma02g01346 622 PIRSF Miro 561 622 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Gma02g01346 622 PIRSF Miro 299 486 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Gma02g01346 622 PIRSF Miro 507 569 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Gma02g01346 622 PIRSF Miro 28 305 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Gma02g01346 622 Gene3D - 32 179 IPR027417 -
Gma02g01346 622 SMART rho_sub_3 21 177 IPR001806 GO:0003924|GO:0005525
Gma02g01346 622 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
Gma02g01346 622 SUPERFAMILY EF-hand 180 350 IPR011992 -
Gma02g01346 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 550 IPR027417 -
Gma02g01346 622 Pfam EF hand associated 228 304 IPR013567 -
Gma02g01346 622 Gene3D - 184 288 - -
Gma02g01346 622 PANTHER MITOCHONDRIAL RHO GTPASE 32 475 - -
Gma02g01346 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 209 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01346 Gma-Chr2 15609484 15620250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01346 32 619 EF-hand Containing Proteins AT3G63150 46.213 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01346 K07870 - gmx:100806983 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00252 10 2308205 2317529 Gma02g01346 02 15609484 15620250 GST
Gma19g01473 19 43963005 43971837 Gma02g01346 02 15609484 15620250 PCT
Gma03g01410 03 40258858 40267714 Gma02g01346 02 15609484 15620250 PCT
Gma02g01346 02 15609484 15620250 Gma19g01473 19 43963005 43971837 PCT
Gma02g01346 02 15609484 15620250 Gma03g01410 03 40258858 40267714 PCT