Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00293 ATGGTAGCACCTTTCCCAATTTCCACTCGAAGCGAAAAGATTTTACCCATTGACCTTCCCGTGGTAGACCTAACCGCGGAAAGATCAATGGTGACAAAACTCATTGTGAAGGCGTGTGAGGAATATGGTTTCTTCAACGTGATTAACCATGGCATTCCTCGTGACACCATAGCTGAAATGGAAGAAACAGCTTTTGATTTCTTTGCCAAACCAATGGCTCAAAAGAAACAACTTGCCCTCTATGGCTGCAAGAACATAGGCTTCAATGGAGACATGGGAGAGGTCGAGTACCTTCTCCTCAGTGCTACTCCTCCCTCTATTTCTCACTTCAAAAACATCTCCAATATGCCATCAAAATTCAGCTCTAGTGTGAGTGCATACACAGAGGGTGTGAGGGAGCTGGCATGTGAGATTTTGGAGCTAATGGCAGAGGGTCTGGGGGTCCCGGATACATGGTTTTTCAGCAGGTTGATCAGGGAGGTTGATAGTGACTCAGTCCTTAGGTTCAATCACTACCCACCTATTATACTTAACAACAAAGATTGCAAGGACAACCACAACCACACCAAGGTAATTGGCTTTGGGGAGCATTCTGACCCTCAGATTCTTACCATCCTCAGATCCAACGACGTGGGTGGCCTCCAAATCTCTCTTCAAGATGGTGTGTGGAACCCAGTTGCCCCTGACCCCTCAGCTTTCTgtgttaatgtgggtgatctcttacagGTTATGACAAATGGGAGATTTGTGAGCGTGAGACACAGGGCCATGACCAACTCACACAAGTCTAGAATGTCGGTTGCATATTTTGGTGGTCCACCACTTGATGCATGCATTGTTGCTCCCCCAGTTATGGTTACACCCGAGAGGCCCTCTCTTCTCTTCAAGCCATTTACTTGGGCTGAATACAAGAAAGTCACCTATTCTATGAGGCTTGGAGAACACCGCATTGACCTTTTCAGGAGCAACTAG 972 0.4558 MVAPFPISTRSEKILPIDLPVVDLTAERSMVTKLIVKACEEYGFFNVINHGIPRDTIAEMEETAFDFFAKPMAQKKQLALYGCKNIGFNGDMGEVEYLLLSATPPSISHFKNISNMPSKFSSSVSAYTEGVRELACEILELMAEGLGVPDTWFFSRLIREVDSDSVLRFNHYPPIILNNKDCKDNHNHTKVIGFGEHSDPQILTILRSNDVGGLQISLQDGVWNPVAPDPSAFCVNVGDLLQVMTNGRFVSVRHRAMTNSHKSRMSVAYFGGPPLDACIVAPPVMVTPERPSLLFKPFTWAEYKKVTYSMRLGEHRIDLFRSN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00293 323 Pfam 2OG-Fe(II) oxygenase superfamily 165 271 IPR044861 -
Gma09g00293 323 PANTHER PLANT GIBBERELLIN 2-OXIDASE 5 321 - -
Gma09g00293 323 Pfam non-haem dioxygenase in morphine synthesis N-terminal 19 79 IPR026992 -
Gma09g00293 323 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 162 273 IPR005123 -
Gma09g00293 323 SUPERFAMILY Clavaminate synthase-like 16 313 - -
Gma09g00293 323 Gene3D - 6 311 IPR027443 -
Gma09g00293 323 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00293 Gma-Chr9 2749091 2756875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00293 17 270 Glycosyltransferase AT5G59530 30.182 3.18e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00293 K04125 - gmx:100811043 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00293 09 2749091 2756875 Gma09g00293 09 2749091 2756875 ECH
Gma15g01277 15 11276949 11289176 Gma09g00293 09 2749091 2756875 GST
Gma17g00346 17 2768820 2773536 Gma09g00293 09 2749091 2756875 PCT
Gma09g00293 09 2749091 2756875 Gma17g00346 17 2768820 2773536 PCT