Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03076 ATGTCGGAAAAGGGTCGGCCACTTCCCAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCAGCTGAGGGGTTCACAGTGATTTTTAATAAGGCCAGGGATGAGAAAAAGACAGGTGGCAACCCAGAGTCACCAGGAAAGACTGCTACTGATCCTCATAGCAAACCTGCAGTAGAGCCTGGCAAAACTCAGACTAAAAAATGGTTTTGCTGCATGCAAAACCCTTCTGCCGAATCATAG 240 0.4708 MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKTATDPHSKPAVEPGKTQTKKWFCCMQNPSAES 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03076 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Gma08g03076 79 MobiDBLite consensus disorder prediction 31 79 - -
Gma08g03076 79 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 2 65 - -
Gma08g03076 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 2 65 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03076 Gma-Chr8 47395155 47398629 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03076 - - gmx:100305826 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03076 08 47395155 47398629 Gma08g03076 08 47395155 47398629 ECH
Gma18g00700 18 7235391 7238754 Gma08g03076 08 47395155 47398629 GST
Gma08g03076 08 47395155 47398629 Gma02g02816 02 53702631 53703789 PCT
Gma02g02816 02 53702631 53703789 Gma08g03076 08 47395155 47398629 PCT