Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00960 ATGCCTAGTTTTGTGGCTGAAAAGAAGATATTTGTAGAGCCAAATATGTGTTTTACCAATTTGGCCAACCATGATAGACCAACTCTTACAAAAAACAATCATTATGTGAGGTCTGAGGCTCTGGATGATGATGATGATGGTACTAGCCCCATCCTACCTGGGCTGCCTGATGATGTTTCAAAACACTGCCTTGCACTCGTGCCTCGTTCGAACTTCCCAGCCATGGGTGGTGTCTGCAAGAGATGGAGGGGCTTTATTCGAAGCAAAGAATTTATAACCGTGCGAAAATTGGCTGGGATGCATGAGGAATGGCTCTATATCTTGACAGCAGGCAGTGAAGGAAAAGGGAGCCATTGGGAGGTCATGGATTGTCTTGGGCATAATCGCCGATCTCTTCCACCAATGCCTGGTCCAGCAAAGGCTGGCTTTGGGGTAGTAGTTCTTAATGGAAAGCTCCTTGTTATGGCTGGTTATTCATCCATTGATGGGACTGCTTCTGTCTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAACAGCTGGAGCAGATTGTCAAGCATGAACGTGGCTCGGTATGACTTTGCTTGTGCTGAAGTCGACGGCTTGGTTTATGCCGTTGGAGGCTATGGCGCAACCGGTGACAGTCTCTCAAGTGCAGAGGTGTATGATCTGGATACCGACAAGTGGACGCCAATAGAGAGTCTCCGTCGCCCGAGATGGGGTTGCTTTGCCTGTGGATTCGAGGGGAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTCACAATTGGAAACTCCAAGTTTGTTGATGTCTACAACCCTGAGAAGCACGGGTGGTGTGAGATGAAAAATGGGTGTGTCATGGTCACTGCTTATGCAGTGCTGGAAAAGAAGTTGTTCTGCATGGAGTGGAAGAACCAGCGGAAGTTGGCAATATTCAATCCAGAGGACAATTCATGGAAAATGGTACCAGTCCCTTTGACAGGGAGTTCAAGCATTGGTTTTCGGTTCGGGATATTGGATGTGTAA 1026 0.4756 MPSFVAEKKIFVEPNMCFTNLANHDRPTLTKNNHYVRSEALDDDDDGTSPILPGLPDDVSKHCLALVPRSNFPAMGGVCKRWRGFIRSKEFITVRKLAGMHEEWLYILTAGSEGKGSHWEVMDCLGHNRRSLPPMPGPAKAGFGVVVLNGKLLVMAGYSSIDGTASVSAEVYQYDSCLNSWSRLSSMNVARYDFACAEVDGLVYAVGGYGATGDSLSSAEVYDLDTDKWTPIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYNPEKHGWCEMKNGCVMVTAYAVLEKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILDV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00960 341 Pfam Kelch motif 190 235 IPR006652 GO:0005515
Gma08g00960 341 Pfam Kelch motif 141 188 IPR006652 GO:0005515
Gma08g00960 341 SMART fbox_2 55 95 IPR001810 GO:0005515
Gma08g00960 341 PANTHER KELCH REPEAT F-BOX PROTEIN 1 340 - -
Gma08g00960 341 SUPERFAMILY Kelch motif 102 326 IPR015915 GO:0005515
Gma08g00960 341 SMART kelc_smart 151 201 IPR006652 GO:0005515
Gma08g00960 341 SMART kelc_smart 202 249 IPR006652 GO:0005515
Gma08g00960 341 Pfam Kelch motif 239 283 IPR011498 GO:0005515
Gma08g00960 341 Pfam F-box domain 54 91 IPR001810 GO:0005515
Gma08g00960 341 PANTHER OS02G0202900 PROTEIN 1 340 IPR045887 -
Gma08g00960 341 SUPERFAMILY F-box domain 49 92 IPR036047 GO:0005515
Gma08g00960 341 Gene3D - 30 330 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00960 Gma-Chr8 8102462 8104236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00960 55 233 Miscellaneous Gene Families AT4G33900 29.016 2.46e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00960 - - gmx:100815474 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00960 08 8102462 8104236 Gma08g00960 08 8102462 8104236 ECH
Gma18g00073 18 593885 595138 Gma08g00960 08 8102462 8104236 PCT
Gma11g02507 11 40249807 40251127 Gma08g00960 08 8102462 8104236 PCT
Gma08g00960 08 8102462 8104236 Gma18g00073 18 593885 595138 PCT
Gma08g00960 08 8102462 8104236 Gma11g02507 11 40249807 40251127 PCT