Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00079 ATGGCTAGGGTTTTAGCTCAGTCTACTGGTATGCCTGGCCTACTGAGTGGGCGAAGGCATGGGCCGCATAAAGGATCAGGAAAAACGAAAAGATCTGTTAAAATGATGAGTACCTTACGAATTCCTGCTTTAAGAATGTCGAGTTTCTCTGGATTACGGACACTTAATCCTTTGGATTCTGTGTCGAGACCACGACACACTTTTCCGTTGACTACAACTTCTAGGCGCGAGAGGGCTAAAAGATGTGTACCTAAAGCTATGTTTGAGCGTTTCACAGAGAAGGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGACGACTGGGGCACAATTTTGTTGGAACGGAACAGATTCTATTGGGTCTCATTGGCGAAGGAACCGGCATTGCTGCTAAGGTTCTGAAGTCAATGGGAATTAACCTCAAGGATGCTCGGGTTGAAGTGGAGAAAATTATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCGTTTACTTCCCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTTGGTCTCCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAATTTGGCTGCTGATCCAAACAATATTCGCGCTCAGGTTATCCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGCCCTGGAAGTAGTAATAACAACAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCGGAAGAGGGGAAATTGGATCCTGTCATGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATTTTGGGTCGTCGTACAAAAAATAATCCTTGTCTTATTGGGGAACCTGGGGTCGGGAAGACAGCTATTGCTGAAGGTCTTGCCCAAAGGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTGCTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAAGAGAGATTGAAGAAACTAATGGAGGAAATCAAACAAAGTGATGAGATAATACTCTTTATTGATGAAGTGCACACTCTAATTGGAGCTGGAGCAGCTGAGGGAGCAATTGATGCTGCAAATATATTAAAACCAGCTCTTGCCAGAGGTGAACTGCAGTGTATAGGAGCCACAACACTGGATGAATATAGGAAGCACATTGAAAAGGATCCAGCTTTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTCAATGAAACCATACAAATACTGAAAGGACTCAGAGAACGCTATGAAATTCACCACAAGCTTCATTACACAGATGATGCTCTTGTAGCTGCTGCCCAGCTATCACACCAATATATTAGTGATCGATTTTTGCCAGACAAAGCTATAGATTTAATTGATGAAGCAGGTTCTCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTTAGACAGATTGTAAAGGAGAAAGAAGAATCTGTTCGCAATCAAGACTTTGAGAAGGCCGGAGAGCTAAGAGATAAAGAAATGGATCTTAAGGCGCAGATATCTGCACTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAAAGTGAGGCAGGAGATGAAGGTCCCATGGTCACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATTCCTGTGGAGAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAAATGGAAGAGACTTTACACAAGCGAGTCATAGGTCAGGATGAAGCAGTGAAAGCCATAAGCAGGGCCATCCGTCGAGCCAGGGTTGGACTGAAGAACCCTAACCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTGCATACTACTTTGGTTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTCATGGAAAGGCACACAGTCTCGAAACTTATTGGTTCACCTCCTGGATACGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTTCGCCGTCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGATTAACAGACAGCAAAGGAAGAACTGTGGACTTCAAGAACACGCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAAGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAACCGAATCAAGAGCTTGGTGACTGAGGAACTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAATTGGAGGTTAAGGAGATAGCAGACATAATGCTGAAGGAGGTGTTCCAGAGACTGAAAGCTAAAGAGATTGATCTTTCAGTGACAGAAAGATTTAGGGAGAGGGTGGTTGACGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATAATGCAACTTTTGGAGGATAGCATGGCTGAGAAGATGCTTGCTAGAGAGATTAAGGAGGGTGACTCAGTTATAGTTGATTCTGATTCTGAGGGTAATGTGATTGTGCTCAACGGTAGTAGTGGTGCCCCAGATTCACTAGAAGATGTCTTAGTTAGTTGA 2760 0.4449 MARVLAQSTGMPGLLSGRRHGPHKGSGKTKRSVKMMSTLRIPALRMSSFSGLRTLNPLDSVSRPRHTFPLTTTSRRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTSRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLAADPNNIRAQVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVMGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVNETIQILKGLRERYEIHHKLHYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKEESVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAESEAGDEGPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKAKEIDLSVTERFRERVVDEGYNPSYGARPLRRAIMQLLEDSMAEKMLAREIKEGDSVIVDSDSEGNVIVLNGSSGAPDSLEDVLVS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00079 919 PANTHER ATP-DEPENDENT CLP PROTEASE 72 911 - -
Gma08g00079 919 Coils Coil 343 363 - -
Gma08g00079 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 636 654 IPR001270 GO:0005524
Gma08g00079 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 681 699 IPR001270 GO:0005524
Gma08g00079 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 710 728 IPR001270 GO:0005524
Gma08g00079 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 743 757 IPR001270 GO:0005524
Gma08g00079 919 MobiDBLite consensus disorder prediction 1 33 - -
Gma08g00079 919 CDD AAA 606 754 - -
Gma08g00079 919 Pfam ATPase family associated with various cellular activities (AAA) 294 410 IPR003959 GO:0005524|GO:0016887
Gma08g00079 919 CDD AAA 273 424 - -
Gma08g00079 919 Pfam AAA domain (Cdc48 subfamily) 631 805 IPR003959 GO:0005524|GO:0016887
Gma08g00079 919 ProSitePatterns Chaperonins clpA/B signature 2. 666 684 IPR028299 -
Gma08g00079 919 Gene3D - 812 909 - -
Gma08g00079 919 Gene3D - 87 234 IPR036628 -
Gma08g00079 919 Gene3D - 435 578 - -
Gma08g00079 919 Gene3D - 584 810 IPR027417 -
Gma08g00079 919 SUPERFAMILY Double Clp-N motif 89 223 IPR036628 -
Gma08g00079 919 Pfam AAA lid domain 433 534 IPR041546 -
Gma08g00079 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 526 IPR027417 -
Gma08g00079 919 Pfam C-terminal, D2-small domain, of ClpB protein 812 892 IPR019489 -
Gma08g00079 919 Pfam Clp amino terminal domain, pathogenicity island component 178 229 IPR004176 -
Gma08g00079 919 Pfam Clp amino terminal domain, pathogenicity island component 102 154 IPR004176 -
Gma08g00079 919 Gene3D - 242 432 IPR027417 -
Gma08g00079 919 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 72 911 - -
Gma08g00079 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 896 IPR027417 -
Gma08g00079 919 Coils Coil 502 522 - -
Gma08g00079 919 ProSitePatterns Chaperonins clpA/B signature 1. 384 396 IPR018368 GO:0005524
Gma08g00079 919 Gene3D UVR domain 498 562 - -
Gma08g00079 919 SMART AAA_5 289 429 IPR003593 -
Gma08g00079 919 SMART AAA_5 632 813 IPR003593 -
Gma08g00079 919 ProSiteProfiles Clp repeat (R) domain profile. 88 230 IPR004176 -
Gma08g00079 919 SMART ClpB_D2_small_2 812 903 IPR019489 -
Gma08g00079 919 ProSiteProfiles UVR domain profile. 506 541 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00079 Gma-Chr8 683181 689887 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00079 K03696 - gmx:100795228 1759.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01469 06 14042833 14050079 Gma08g00079 08 683181 689887 ECH
Gma08g00079 08 683181 689887 Gma08g00079 08 683181 689887 ECH
Gma05g01975 05 41099261 41105247 Gma08g00079 08 683181 689887 GST
Gma08g00079 08 683181 689887 Gma04g01938 04 49782317 49787764 PCT
Gma08g00079 08 683181 689887 Gma06g01469 06 14042833 14050079 PCT
Gma04g01938 04 49782317 49787764 Gma08g00079 08 683181 689887 PCT
Gma06g01469 06 14042833 14050079 Gma08g00079 08 683181 689887 PCT