Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01469 ATGGCTAGGGTTTTGGCTCAGTCTGTTAATGTCCCTGGTCTAGTGGCTGAGCATAGGCATGGTCAGCAAAAGGGATCAGGAAAATTAAAAAGATCGACCAAAATGATGAGTGCTTTACGGACAAATGGATTAAGAATGTCAGGTTTCTCAGGGCTTCGTACTTTCAATCCTTTGGATACTATGTTGAGACCTGGCATAGATTTTCATTCTAAGGTATCCATTGCAACGTCTTCGCGGCAAGCAAGAGCTACCAGATGCGTGCCCAAAGCCATGTTTGAGCGTTTCACTGAGAAAGCAATCAAAGTGATTATGCTAGCCCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGCACAGAGCAAATTCTATTGGGTCTTATCGGCGAAGGAACTGGTATTGCTGCTAAGGTGCTAAAGTCAATGGGGATCAACCTCAAAGATGCACGAGTGGAAGTAGAAAAAATAATTGGAAGGGGTAGTGGATTTGTGGCTGTTGAGATTCCATTTACTCCCCGTGCAAAGCGTGTTTTAGAACTTTCACTGGAGGAAGCTCGTCAACTTGGTCACAATTATATTGGATCTGAGCACCTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTGGAAAATCTGGGTGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTTACTGCAACTGTTGGCTCAGGAAGTAGTGGTAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACCAAGCTAGCGGAAGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCCGCAAATTGAACGTGTGACTCAAATTTTAGGTCGTCGGACTAAAAATAATCCTTGTCTTATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTCGCTCAGCGGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAAAAGGTCATAACCCTCGACATGGGTCTGCTTGTTGCTGGAACTAAATACCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAGATCAAACAAAGTGACGAGATAATACTTTTCATCGATGAAGTGCACACTTTGATTGGAGCAGGAGCAGCAGAAGGGGCAATTGATGCTGCTAACATACTAAAGCCAGCTCTTGCAAGAGGTGAACTACAGTGTATTGGAGCCACAACATTAGACGAGTACAGGAAGCACATTGAAAAAGATCCTGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAAATACTGAAAGGACTTAGAGAGCGGTATGAAATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAGCTGTCCTACCAGTATATCAGTGATCGATTTTTGCCAGACAAAGCTATCGATTTGATTGATGAAGCTGGTTCACGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAACTTGACAAGGAGGTGAGGCAGATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGTGATAGAGAGATGGATCTTAAGGCACAGATCTCAACACTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGACTGAGGCAGGGGATGAAGGTCCTATTGTGACTGAAGCTGACATACAGCATATTGTCTCATCCTGGACTGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTCCTGAAGATGGAAGAGACTTTACATAAGCGAGTCATTGGTCAGGATGAAGCAGTTAAAGCCATTAGTCGGGCTATCCGTCGAGCTCGGGTTGGACTAAAAAATCCTAATCGTCCCATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCCGAAGAAGCTATGATTCGGCTTGACATGAGTGAATTCATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACTGAAGGTGGTCAATTGACCGAGGCAGTTCGGCGTCGTCCTTACACTGTTGTACTGTTTGATGAGATTGAGAAAGCCCATCCTGATGTGTTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGTAAGGGCAGAACAGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCAAAATTGGATTTGATCTGGATTACGATGAGAAGGATAGCAGTTATAACAGAATCAAGAGCCTGGTAACTGAGGAGCTAAAACAATACTTCAGGCCAGAATTTTTGAATAGATTGGATGAAATGATTGTCTTCAGGCAGCTCACAAAACTGGAGGTGAAGGAGATTGCTGACATAATGCTCAAAGAGGTGTTTGATAGACTGAAGGTGAAAGATATTGAACTTCAAGTGACAGAAAGATTCAGGGACAGAGTGGTGGAGGAAGGTTATAACCCTAGTTATGGAGCTAGACCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCCAGAGAGATCAAGGAGGGCGACTCTGTTATAGTGGATGTTGATTCTGATGGTAATGTGATTGTGCTCAATGGTAGCAGCGGAGCCCCCGAATCCTTGCCAGAGACGCTTCCTGTATAA 2769 0.4493 MARVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMMSALRTNGLRMSGFSGLRTFNPLDTMLRPGIDFHSKVSIATSSRQARATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISTLVEKGKEMSKAETEAGDEGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKVKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPETLPV 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01469 922 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Gma06g01469 922 Gene3D - 243 435 IPR027417 -
Gma06g01469 922 Coils Coil 346 366 - -
Gma06g01469 922 Gene3D - 587 813 IPR027417 -
Gma06g01469 922 Coils Coil 505 525 - -
Gma06g01469 922 Pfam ATPase family associated with various cellular activities (AAA) 297 413 IPR003959 GO:0005524|GO:0016887
Gma06g01469 922 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515
Gma06g01469 922 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Gma06g01469 922 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Gma06g01469 922 Gene3D - 437 581 - -
Gma06g01469 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 530 IPR027417 -
Gma06g01469 922 CDD AAA 275 427 - -
Gma06g01469 922 Gene3D UVR domain 501 565 - -
Gma06g01469 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524
Gma06g01469 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524
Gma06g01469 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524
Gma06g01469 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524
Gma06g01469 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 902 IPR027417 -
Gma06g01469 922 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Gma06g01469 922 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Gma06g01469 922 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 75 922 - -
Gma06g01469 922 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Gma06g01469 922 Pfam AAA domain (Cdc48 subfamily) 634 808 IPR003959 GO:0005524|GO:0016887
Gma06g01469 922 CDD AAA 609 757 - -
Gma06g01469 922 SMART AAA_5 292 432 IPR003593 -
Gma06g01469 922 SMART AAA_5 635 816 IPR003593 -
Gma06g01469 922 SMART ClpB_D2_small_2 815 905 IPR019489 -
Gma06g01469 922 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Gma06g01469 922 PANTHER ATP-DEPENDENT CLP PROTEASE 75 922 - -
Gma06g01469 922 Pfam AAA lid domain 435 536 IPR041546 -
Gma06g01469 922 Gene3D - 815 912 - -
Gma06g01469 922 Gene3D - 91 240 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01469 Gma-Chr6 14042833 14050079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01469 K03696 - gmx:100804035 1743.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01469 06 14042833 14050079 Gma08g00079 08 683181 689887 ECH
Gma06g01469 06 14042833 14050079 Gma06g01469 06 14042833 14050079 ECH
Gma04g01938 04 49782317 49787764 Gma06g01469 06 14042833 14050079 GST
Gma05g01975 05 41099261 41105247 Gma06g01469 06 14042833 14050079 PCT
Gma08g00079 08 683181 689887 Gma06g01469 06 14042833 14050079 PCT
Gma06g01469 06 14042833 14050079 Gma05g01975 05 41099261 41105247 PCT
Gma06g01469 06 14042833 14050079 Gma08g00079 08 683181 689887 PCT