Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01938 ATGGCTAGGGTTTTGGCTCAGTCTATTAATGTCCCTGGTCTATTGGCTGAGCATAGGCATGGTCAGCAAAAGGAATCAGGAAAATTAAAAAGATCGACCAAAATGATGAGTGCTTTACGAACAAATGGATTAAGAATGTCAGGTTTCTCAGGGCTTCGTACTTTCAATCCTTTGGATACTATGTTGAGACCTGGAATAGATTTTCATTCTAAGGTATCCATTGCAACTTCTTCACGGCGAGCAAGAGCTACCAGATGCGTGCCCAAAGCCATGTTTGAGCGTTTCACTGAGAAAGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAAATTCTATTGGGTCTTATCGGCGAAGGAACTGGTATTGCTGCTAAGGTGCTAAAGTCAATGGGGATCAACCTCAAAGATGCACGAGTGGAAGTAGAAAAAATAATTGGAAGGGGTAGTGGATTTGTGGCTGTTGAAATTCCGTTTACTCCCCGGGCAAAGCGTGTTTTAGAACTTTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACCTGCTTCTGGGTCTTCTTCGAGAGGGCGAGGGTGTAGCAGCACGTGTTCTGGAAAATCTGGGTGCTGATCCTACTAATATTCGCACACAGGCTAGTATTATGCCTTCATTTACCTTTTTACCACAAACTTCTGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTTACTGCTACTGTTGGCTCAGGAAGTAGTGGTAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACCAAGCTAGCAGAAGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCCGCAAATTGAACGCGTGACTCAAATTTTAGGTCGTCGGACCAAAAATAATCCTTGTCTTATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCTAATGGTGATGTACCTGAAACCATAGAGGGAAAAAAGGTCATAACCCTTGACATGGGTCTGCTTGTTGCCGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGTGATGAGATAATACTTTTTATCGATGAAGTGCACACTTTGATTGGAGCAGGAGCAGCGGAAGGGGCTATTGATGCTGCTAACATACTAAAGCCAGCTCTTGCAAGAGGTGAACTACAGTGTATTGGAGCCACAACATTAGACGAGTATAGGAAGCACATTGAAAAAGATCCTGCTTTGGAGAGACGATTCCAGCCCGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAAATACTGAAGGGACTTAGAGAGCGATATGAAATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAGCTGTCGTACCAGTATATCAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCACGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAACTTGACAAGGAGGTCAGGCAGATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGATTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAGATGGATCTTAAGGCACAGATCTCAACACTTGTAGAGAAAGGTAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGGGATGCAAGTCCTGTTGTGACTGAAGCTGACATACAGCATATTGTCTCATCTTGGACTGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCAGATCGCCTCCTCAAGATGGAAGAGACTTTACATAAGCGGGTCATTGGTCAGGATGAAGCAGTTAAAGCCATTAGTCGGGCTATCCGTCGAGCTCGGGTTGGATTAAAGAACCCTAATCGTCCTATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTGCATACTACTTCGGCTCCGAAGAAGCTATGATCCGGCTTGACATGAGTGAATTCATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACTGAAGGTGGTCAATTGACTGAGGCAGTTCGGCGTCGTCCTTACACTGTTGTACTATTTGATGAGATTGAGAAAGCCCATCCTGATGTGTTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGTAAGGGCAGAACGGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTAAAATTGGATTTGATCTGGATTATGATGAGAAGGATAGCAGTTATAACAGAATCAAGAGCCTGGTAACCGAGGAGCTAAAACAATACTTCAGGCCAGAATTTTTGAATAGGTTGGATGAAATGATCGTCTTCAGGCAGCTCACAAAACTGGAGGTGAAGGAGATTGCTGACATAATGCTCAAAGAGGTGTTTGAAAGACTGAAGGTGAAAGATATTGAACTTCAAGTGACAGAAAGATTTAGGGACAGAGTGGTGGAGGAAGGTTATAACCCTAGTTATGGAGCTAGACCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCCAGAGAGATCAAAGAGGGTGACTCTGTTATAGTGGATGTTGATTCTGACGGTAATGTGATTGTGCTCAATGGTAGCAGCGGAGCCCCCGAGTCCTTGCCAGAGGCACTTCCTGTATAA 2811 0.445 MARVLAQSINVPGLLAEHRHGQQKESGKLKRSTKMMSALRTNGLRMSGFSGLRTFNPLDTMLRPGIDFHSKVSIATSSRRARATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQASIMPSFTFLPQTSVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISTLVEKGKEMSKAESEAGDASPVVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPEALPV 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01938 936 Gene3D - 451 595 - -
Gma04g01938 936 Pfam ATPase family associated with various cellular activities (AAA) 311 427 IPR003959 GO:0005524|GO:0016887
Gma04g01938 936 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Gma04g01938 936 Pfam Clp amino terminal domain, pathogenicity island component 182 227 IPR004176 -
Gma04g01938 936 Gene3D - 601 827 IPR027417 -
Gma04g01938 936 Pfam C-terminal, D2-small domain, of ClpB protein 829 909 IPR019489 -
Gma04g01938 936 PANTHER ATP-DEPENDENT CLP PROTEASE 75 936 - -
Gma04g01938 936 CDD AAA 289 441 - -
Gma04g01938 936 Pfam AAA lid domain 449 550 IPR041546 -
Gma04g01938 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 916 IPR027417 -
Gma04g01938 936 SUPERFAMILY Double Clp-N motif 93 226 IPR036628 -
Gma04g01938 936 ProSitePatterns Chaperonins clpA/B signature 1. 401 413 IPR018368 GO:0005524
Gma04g01938 936 Gene3D - 91 232 IPR036628 -
Gma04g01938 936 ProSiteProfiles UVR domain profile. 523 558 IPR001943 GO:0005515
Gma04g01938 936 Gene3D - 257 449 IPR027417 -
Gma04g01938 936 Coils Coil 519 539 - -
Gma04g01938 936 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 75 936 - -
Gma04g01938 936 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Gma04g01938 936 SMART AAA_5 306 446 IPR003593 -
Gma04g01938 936 SMART AAA_5 649 830 IPR003593 -
Gma04g01938 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 547 IPR027417 -
Gma04g01938 936 Gene3D UVR domain 515 579 - -
Gma04g01938 936 SMART ClpB_D2_small_2 829 919 IPR019489 -
Gma04g01938 936 Gene3D - 829 926 - -
Gma04g01938 936 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 760 774 IPR001270 GO:0005524
Gma04g01938 936 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 653 671 IPR001270 GO:0005524
Gma04g01938 936 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 698 716 IPR001270 GO:0005524
Gma04g01938 936 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 727 745 IPR001270 GO:0005524
Gma04g01938 936 ProSitePatterns Chaperonins clpA/B signature 2. 683 701 IPR028299 -
Gma04g01938 936 Pfam AAA domain (Cdc48 subfamily) 648 822 IPR003959 GO:0005524|GO:0016887
Gma04g01938 936 CDD AAA 623 771 - -
Gma04g01938 936 Coils Coil 360 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01938 Gma-Chr4 49782317 49787764 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01938 K03696 - gmx:100796195 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01938 04 49782317 49787764 Gma06g01469 06 14042833 14050079 GST
Gma05g01975 05 41099261 41105247 Gma04g01938 04 49782317 49787764 PCT
Gma08g00079 08 683181 689887 Gma04g01938 04 49782317 49787764 PCT
Gma04g01938 04 49782317 49787764 Gma05g01975 05 41099261 41105247 PCT
Gma04g01938 04 49782317 49787764 Gma08g00079 08 683181 689887 PCT