Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00069 ATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTTTAGCTGAATTACCTACTCAATTTTTAAGTTACATGCGGAGCAGAAATATCCTACCGAATTCCTAG 1743 0.4257 MGNCCSDVAGGQSAIGGTAAGHLNPANAPNDAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNAALTELGRTEVILNSLNPTWITKHTLIYNFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSIRSTQSQNCGKLLVHAEECVSSKTTIEMILRCSDLEYRDLFSRSDPFLLLSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGENFISSAPAGHNSHNKVLKSQLFVDKFSESIQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAVLEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHCCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRSRNILPNS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00069 580 CDD C2A_Copine 47 168 - -
Gma08g00069 580 SUPERFAMILY vWA-like 343 525 IPR036465 -
Gma08g00069 580 CDD C2B_Copine 196 291 IPR037768 -
Gma08g00069 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 165 IPR035892 -
Gma08g00069 580 Pfam C2 domain 199 290 IPR000008 -
Gma08g00069 580 Pfam C2 domain 54 154 IPR000008 -
Gma08g00069 580 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 579 - -
Gma08g00069 580 CDD vWA_copine_like 313 567 IPR010734 -
Gma08g00069 580 Gene3D C2 domain 195 315 IPR035892 -
Gma08g00069 580 SMART VWA_4 342 539 IPR002035 -
Gma08g00069 580 Gene3D C2 domain 52 194 IPR035892 -
Gma08g00069 580 SMART C2_3c 199 301 IPR000008 -
Gma08g00069 580 SMART C2_3c 48 161 IPR000008 -
Gma08g00069 580 Pfam Copine 363 578 IPR010734 -
Gma08g00069 580 ProSiteProfiles C2 domain profile. 29 164 IPR000008 -
Gma08g00069 580 ProSiteProfiles VWFA domain profile. 344 563 IPR002035 -
Gma08g00069 580 ProSiteProfiles C2 domain profile. 178 303 IPR000008 -
Gma08g00069 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 289 IPR035892 -
Gma08g00069 580 PANTHER COPINE 1 579 IPR045052 GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00069 Gma-Chr8 574649 582664 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00069 - - gmx:100807801 1152.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00069 08 574649 582664 Gma08g00069 08 574649 582664 ECH
Gma08g00069 08 574649 582664 Gma04g01948 04 49937742 49946061 PCT
Gma08g00069 08 574649 582664 Gma06g01457 06 13882971 13890830 PCT
Gma04g01948 04 49937742 49946061 Gma08g00069 08 574649 582664 PCT
Gma06g01457 06 13882971 13890830 Gma08g00069 08 574649 582664 PCT