Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01457 ATGGGAAACTGCTTCTCCGAAGTCGCCGCAGGCCGCGCCGCCATCGGCGGCACCGCCCGCGATTTCCATAATCTTGCCGGCGCTCCAAACGATGCCGTCGATAACTTCCTCAGGTCCCACGGCCACCACGGCCTCTTCTCTCAGATCGAGTTATCGTTTTCCGCTTCTGGCTTGCGTGATCGTGATCTGCTCTTCAAGAGTAATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTTGAGGAGCTTCGCCGCACTGAAGTAGTTCTGAATTCATCAAGCCCCACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGCTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATATAAAGATGCTTGAGCTAGATGAGCAGCAATTTCTTGGCGAGGCAACCTGTGTACTATCTCAGATAATCACACAACCTGATAAATCATTGACTATAGATCTACACACAGAAGATTCTATCGGATCTACCCTTTCCAAAAACAGTGGGAAACTCATGGTGCATTCTGAGGAATGTATTAGCTCAAAGACTGCAATAGAGATGGCATTCAGGTGTTCAGATTTGGAATACAAGGATCTCTTCTCAAGAAATGACCCCTTTTTATTGATATCAAAAGTTGTGGAAGGTAGTGCCCAGATTCCAATTTGCAAAACAGAAGTTATAAGGAATGATCTCAATCCAATATGGAAGTTGGTGTTTGTGAATATTCAACAAGTGGGAAGCAAGGACAGTCCTTTGGTAGTAGAGTGCTATAACTTCAATAGCAATGGAAAACATGATTTAATGGGAAAAGTGCAGAGATCTTTGGCAGAGTTGGAGAACATTCATAATAATGGCCAAGGAGAAAATTTATTTTTGCCTTCTGCTGATGGACAAAACCATGATAACAAGGTGCTGAAGAGCCAACTATTTGTGGATAAATTTACTGAAAGTGTCCAATACACTTTCTTGGATTACTTGGCAGGGGGATTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTCGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACTTGGGGGTTTGGGGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGCAGTAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCTTAATGTATCTCTTGCAGGACCTACACTTTTTGGGCCGGTCATAAGCACTGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGGAAGTACTTTGTTTTATTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTATTGTTAAAGCATCCGACCTGCCATTATCAATTCTTATTGTTGGGGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTAGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGAGCTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTAGCAGAATTACCCGCTCAGTTTTTAACTTACGTTCGGAGCAGAAATATCCAACCAAGCCTCTAG 1737 0.4283 MGNCFSEVAAGRAAIGGTARDFHNLAGAPNDAVDNFLRSHGHHGLFSQIELSFSASGLRDRDLLFKSNPMMVLYARGKNGALEELRRTEVVLNSSSPTWITKHTLIYHFEVVQALVFRVYDVDTQFHNVDIKMLELDEQQFLGEATCVLSQIITQPDKSLTIDLHTEDSIGSTLSKNSGKLMVHSEECISSKTAIEMAFRCSDLEYKDLFSRNDPFLLISKVVEGSAQIPICKTEVIRNDLNPIWKLVFVNIQQVGSKDSPLVVECYNFNSNGKHDLMGKVQRSLAELENIHNNGQGENLFLPSADGQNHDNKVLKSQLFVDKFTESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFRELQSGFSVVQALLAELPAQFLTYVRSRNIQPSL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01457 578 SMART C2_3c 48 161 IPR000008 -
Gma06g01457 578 SMART C2_3c 198 297 IPR000008 -
Gma06g01457 578 Pfam C2 domain 54 158 IPR000008 -
Gma06g01457 578 Pfam C2 domain 200 292 IPR000008 -
Gma06g01457 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Gma06g01457 578 Gene3D C2 domain 195 314 IPR035892 -
Gma06g01457 578 CDD vWA_copine_like 312 565 IPR010734 -
Gma06g01457 578 CDD C2A_Copine 47 166 - -
Gma06g01457 578 SMART VWA_4 341 538 IPR002035 -
Gma06g01457 578 Pfam Copine 362 576 IPR010734 -
Gma06g01457 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Gma06g01457 578 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Gma06g01457 578 Gene3D C2 domain 52 194 IPR035892 -
Gma06g01457 578 CDD C2B_Copine 195 288 IPR037768 -
Gma06g01457 578 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Gma06g01457 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Gma06g01457 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 293 IPR035892 -
Gma06g01457 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 166 IPR035892 -
Gma06g01457 578 PANTHER COPINE 1 577 IPR045052 GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01457 Gma-Chr6 13882971 13890830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01457 - - gmx:100799074 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01457 06 13882971 13890830 Gma06g01457 06 13882971 13890830 ECH
Gma04g01948 04 49937742 49946061 Gma06g01457 06 13882971 13890830 GST
Gma08g00069 08 574649 582664 Gma06g01457 06 13882971 13890830 PCT
Gma06g01457 06 13882971 13890830 Gma08g00069 08 574649 582664 PCT