Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01948 ATGGGAAACCGCTTATCCGAAGTCGCCGCAGGCCGCGCCGCCATCGGCGGCACCGCCGCCGATTTTCTCAATCTGGCCGCCGCTCCAATCGACGCTGTCGAGAACTTCCTCAGGTCCCGCGGCCACCACGGCCTCTTCTCTCAGATCGAGTTATCGTTTTCCGCTTCTGGCTTGCGTGATCGTGATGTGCTCTTCAAGAGTAATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTTGAGGAGCTTTGCCGCACGGAAGTAGTTCTGAATTCATCAAGTCCAAGATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATATAAAGATGCTTGATCTAGATGAACAGCAATTTCTTGGCGAGGCAACCTGTGCACTATCTCAGATAATCACACAACCTGATAAGTCATTGACTATAGATCTATACACAGAAGATTCTGTCGGATCTACCCTTTCCAAAAACTGTGGGAAACTCATGGTGCATGGTGAGGAATGTATTAGCTCAAAGACAGCAATAGAGATGGTATTCAGGTGTTCAGATTTGGAATACAAGTATCTCTTCTCAAGAACTGACCCCTTTTTATTGATATCAAAAGTTGTGGAGGCTGGTGCCCAAATTCCAATTTGCAAAACAGAAGTTATAAGGAATGATCTCAACCCAATATGGAAATCGGTGTTTGTGAATATTCAACAAGTGGGAAGCAAGGACAGTCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGAAAACATGATTTAATGGGAAAAGTGCAGAGATCTTTGGTGGAGTTGGAGAACATTCATAATAATGGCCAAGGAGAAAATTTATTTTTGCCTTCTGCTGATGGACAAAACCATGATAACAAGGTGTTGAAGAGCCAACTATTTGTGGAAAAATTTACTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGCGGGGGGATTTGAATTGAATTTCATGGTGGCTGTTGACTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGACCAAATGCATACCAGAGGGCAATTGTCGAGGTTGGGGAAGTGTTACAGTTGTATGATTCAGACAAACGATTTCCTACTTGGGGATTTGGAGCACGACCAATTGATGGTCCTGTTTGCCATTGTTTCAACTTGAACGGAAGTAGTCATTACTGTGAAGTGGAAGGGATCCAAGGAATTCTGATGGCTTACACAAGTGCCCTGCTTAATGTATCTCTTGCAGGACCTACACTTTTTGGACCGGTCATAAGCACTGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTATTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTATTGTCAAAGCATCTGACCTGCCATTGTCAATCCTTATTGTTGGGGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTAGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTATTCCATTTCGGGAGGTTCAAAGTGGACTTTCAGTTGTTCAAGCATTTCTAGCAGAATTACCGGCTCAATTTTTAACTTACGTGAGGAGCAGAAATATCCAGCCGAACCTCTAG 1737 0.4249 MGNRLSEVAAGRAAIGGTAADFLNLAAAPIDAVENFLRSRGHHGLFSQIELSFSASGLRDRDVLFKSNPMMVLYARGKNGALEELCRTEVVLNSSSPRWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDIKMLDLDEQQFLGEATCALSQIITQPDKSLTIDLYTEDSVGSTLSKNCGKLMVHGEECISSKTAIEMVFRCSDLEYKYLFSRTDPFLLISKVVEAGAQIPICKTEVIRNDLNPIWKSVFVNIQQVGSKDSPLIIECYNFNSNGKHDLMGKVQRSLVELENIHNNGQGENLFLPSADGQNHDNKVLKSQLFVEKFTESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQLYDSDKRFPTWGFGARPIDGPVCHCFNLNGSSHYCEVEGIQGILMAYTSALLNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFIPFREVQSGLSVVQAFLAELPAQFLTYVRSRNIQPNL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01948 578 CDD vWA_copine_like 312 565 IPR010734 -
Gma04g01948 578 Gene3D C2 domain 52 192 IPR035892 -
Gma04g01948 578 Pfam Copine 362 576 IPR010734 -
Gma04g01948 578 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Gma04g01948 578 ProSiteProfiles C2 domain profile. 29 162 IPR000008 -
Gma04g01948 578 SMART VWA_4 341 538 IPR002035 -
Gma04g01948 578 CDD C2B_Copine 195 288 IPR037768 -
Gma04g01948 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 164 IPR035892 -
Gma04g01948 578 CDD C2A_Copine 47 172 - -
Gma04g01948 578 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 6 576 - -
Gma04g01948 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Gma04g01948 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 291 IPR035892 -
Gma04g01948 578 SMART C2_3c 48 161 IPR000008 -
Gma04g01948 578 SMART C2_3c 193 300 IPR000008 -
Gma04g01948 578 PANTHER COPINE 6 576 IPR045052 GO:0005544
Gma04g01948 578 Gene3D C2 domain 193 315 IPR035892 -
Gma04g01948 578 Pfam C2 domain 54 158 IPR000008 -
Gma04g01948 578 Pfam C2 domain 198 290 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01948 Gma-Chr4 49937742 49946061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01948 - - gmx:100798141 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01948 04 49937742 49946061 Gma06g01457 06 13882971 13890830 GST
Gma08g00069 08 574649 582664 Gma04g01948 04 49937742 49946061 PCT
Gma04g01948 04 49937742 49946061 Gma08g00069 08 574649 582664 PCT