Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01458 ATGGAGCCAAACGAGGAGAACGGAGGCAGCACGAGCAGGGAGGAACAGGAAGAGGCATTGGTGGCTTTGATTGAACACCGAACCCACGAAGTCAAAAACCTTCGTCACCGCATCGCTTATTATAAAACCCAGCTTGATGAAGCGGAGAAAAGGTTGCAAGATTCTGAATCCAAATTGGCTCGCCTTCGAGGTCAGACAGTGTCATCTAGAAGTACCTTAGATGATGGAATCAAAACTTTAAAGACAGAGCGCAGATCAAATAGTCCCATTGATAGAAATGAAGGTTCTACCAAAAACCGACATCAATCTAAACCAGAACTTCTTATTCCTTCAGCGAATCCAAAAATATCACAACCTGTACTGTTGCCAAAGTCTTTTTCAAAAGCTTCAATAACTTCCAGTTCTGAAGCCACTCCTGGAGTCCATAGTTCTCCTATCACAGGTGGTAGCTCTAGGGGAAAATCTGACAAGTCTCATAGTAATAGGCTTTCTTCTGAGCAGCAAAAAACTGAAGTCAAGGAGAAAGGGACAAAAAGGAAATTTGAACAAAAAGAACACAAGGAATTGATTCCTTTAATACGCAAGAGTTCTTCGCCAAGCTTGGTAACCTGTCAAACAAGCAACCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTATGTCCTGTGAATGATCAGCTTTTTGTGACCAGTGCTCTGGATGGAGTGGTCAACTTTTGGCAAGTTCAGGCTAAGGGAGCAGGAGCTTCTCGTCTTAGCACTACTGATTGTGCATCCCAAAAGCAGAGGAGATGGCCAGAAGATTTAGCTTGGCATCCAGAGGGAAACAGCCTATTTTCAGTATACAGTGCTGATGGTGGAGACTCTCAAGTATCGATTACAAATCTGAATAAAGGACCAGGGGGAGAACGTGTAAAATTCTTAGAGGACAAGCCTCATGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAAATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTATTCTTTGGAGTGAGCAGGATGATGAGAAGTGGAAGCCAAAGGCATTGCACAGGAATCTTCACTCATCTGCTGTAATGGGAGTTGCTGGTATGCAGCATAAGCAGATGGTGTTGTCGGTTGGTGCAGACAGGAGAATATTTGGGTATGATGTACGTGCTGGAAGAGCAGATTTCAAGCATCAGGTTGACAGTAAATGCATGAGTGTCCTGCCCAATCCGTCCGACTTCAATTTATTCATGGTTCAAACTGGGACCCACGAGAGGCAGCTTCGGTTGTTTGATATCAGATTGAGGAATACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAATCAGCTCTGATAAATCAGGCTTGGTCTCCTGATGGACTTTATATAACATCTGGGTCTGCTGATCCTGTGATTCACATATTTGATATAAGGTATACTGCTCACAAGCCTTCCCAATCTATAAGAGTGCATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCAGTCTATTCCTCTTGTTATTTCCATATCATCTGATCTCAACATTGGACTGCATAAGGTTTACTCTTGA 1602 0.4307 MEPNEENGGSTSREEQEEALVALIEHRTHEVKNLRHRIAYYKTQLDEAEKRLQDSESKLARLRGQTVSSRSTLDDGIKTLKTERRSNSPIDRNEGSTKNRHQSKPELLIPSANPKISQPVLLPKSFSKASITSSSEATPGVHSSPITGGSSRGKSDKSHSNRLSSEQQKTEVKEKGTKRKFEQKEHKELIPLIRKSSSPSLVTCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNFWQVQAKGAGASRLSTTDCASQKQRRWPEDLAWHPEGNSLFSVYSADGGDSQVSITNLNKGPGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWSEQDDEKWKPKALHRNLHSSAVMGVAGMQHKQMVLSVGADRRIFGYDVRAGRADFKHQVDSKCMSVLPNPSDFNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQAWSPDGLYITSGSADPVIHIFDIRYTAHKPSQSIRVHQKRVFRAMWLQSIPLVISISSDLNIGLHKVYS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01458 533 SMART WD40_4 304 347 IPR001680 GO:0005515
Gma06g01458 533 SMART WD40_4 353 393 IPR001680 GO:0005515
Gma06g01458 533 SMART WD40_4 491 530 IPR001680 GO:0005515
Gma06g01458 533 SMART WD40_4 449 486 IPR001680 GO:0005515
Gma06g01458 533 SMART WD40_4 203 244 IPR001680 GO:0005515
Gma06g01458 533 SUPERFAMILY WD40 repeat-like 210 530 IPR036322 GO:0005515
Gma06g01458 533 MobiDBLite consensus disorder prediction 60 118 - -
Gma06g01458 533 Coils Coil 31 65 - -
Gma06g01458 533 Pfam WD domain, G-beta repeat 463 486 IPR001680 GO:0005515
Gma06g01458 533 Gene3D - 131 405 IPR015943 GO:0005515
Gma06g01458 533 MobiDBLite consensus disorder prediction 132 154 - -
Gma06g01458 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 531 - -
Gma06g01458 533 MobiDBLite consensus disorder prediction 60 75 - -
Gma06g01458 533 MobiDBLite consensus disorder prediction 132 179 - -
Gma06g01458 533 MobiDBLite consensus disorder prediction 155 179 - -
Gma06g01458 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 531 - -
Gma06g01458 533 MobiDBLite consensus disorder prediction 76 101 - -
Gma06g01458 533 Gene3D - 406 533 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01458 Gma-Chr6 13904800 13912800 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01458 - - gmx:100799587 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01458 06 13904800 13912800 Gma06g01458 06 13904800 13912800 ECH
Gma04g01946 04 49917358 49923595 Gma06g01458 06 13904800 13912800 GST
Gma08g00070 08 590263 592478 Gma06g01458 06 13904800 13912800 PCT
Gma06g01458 06 13904800 13912800 Gma08g00070 08 590263 592478 PCT