Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01946 ATGGAGCCAAACGAGGAGAACGGAGGCAGTACGAGCAGGGAGGAACAGGAAGAGGCATTGGTGGCTTTGATCGAACACCGAACCCACGAAGTCAAAAACCTCCGTCACCGCATCGCTTATTATAAAACCCAGCTTGATGAAGCGGAGAAAAGGTTGCAAGATTCTGAATCCAAATTGGCTCGCCTTCGAGGTCAAACAGTGTTATCTAGAAGTACCTTAGATGATGGAATCGAAACTTTGAAGACAAAGAGCAGATCAAGCAGTCCCATTGATAGAAACGAAGTTTCTACCAAAAGCCAACATCAATCTAAACCAGAACTTCTTATTCCTTCACTGAATCCAAAAATATCACAACCTGTATTGTTGCCAAAGTCTTCTTCAAAAGCTTCAATAACTTCCAGTTCTGAAGCCACTTCTGGAGTCCATAATTCTCCTATCACGGGTGGTAGCTCTAGGGGAAAATCTGACAAGTCTCAGAGTAATAGACTTTCTTCTGAGCAGCAAAAAACTGAAGTCAAGGAGAAAGGGACAAAAAGGAAATTTGAACAAAAAGGACACAAGGAATTGATTCCTTTAGTACGCAAGAGTTCTTCACCAAGCTTGGTAACCTGTCAAACAAGCAACCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCTGTGAATGATCAGCTTTTTGTGACTAGTGCTCTGGATGGAGTGGTCAACTTTTGGCAAGTTCAGGCTAAGGGAGCAGGAGCCTCTCGTCTTAGCACTACCGATTGTGCATCCCAAAAGCAGAGGAGATGGCCAGAAGATTTAGCTTGGCATCCAGAGGGAAACAGCCTATTTTCAGTATACAGTGCTGATGGTGGAGACTCTCAAGTATCGATTACAAATTTGAATAAAGGACAAGGGGGAGAACGTGTAAAATTCTTAGAGGACAAGCCGCATGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAAATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTATTCTTTGGAATGAGCAGGATGATGAGAAGTGGAAGCCAAAGGCATTGCACAGGAATCTTCACTCATCTGCTGTAATGGGAGTTGCTGGTATGCAGCAGAAGCAGATGGTGTTGTCGGTTGGTGCAGACAGGAGAATATTTGGGTATGATGTACGTGTAGGAAGAGCAGATTTCAAGCATCAGGTTGATAGTAAATGCATGAGTGTCCTGCCCAATCCATCCGACTTCAATTTATTCATGGTTCAAACAGGGACGCACGAGAGGCAGCTTCGGTTGTTTGATATCAGATTGAGGAATACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAATCAGCTCTGATAAATCAGGCTTGGTCTCCTGATGGACATTATATAACATCTGGGTCTGCAGATCCTGTGATTCACATATTTGATATAAGGTATACTGCTCACAAGCCTTCCCAATCTATAAGAGCGCATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCAGTCTATTCCTCTTGTCATTTCCATATCATCTGATCTCAACATTGGACTGCACAAGGTTTACTCTTGA 1602 0.4313 MEPNEENGGSTSREEQEEALVALIEHRTHEVKNLRHRIAYYKTQLDEAEKRLQDSESKLARLRGQTVLSRSTLDDGIETLKTKSRSSSPIDRNEVSTKSQHQSKPELLIPSLNPKISQPVLLPKSSSKASITSSSEATSGVHNSPITGGSSRGKSDKSQSNRLSSEQQKTEVKEKGTKRKFEQKGHKELIPLVRKSSSPSLVTCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNFWQVQAKGAGASRLSTTDCASQKQRRWPEDLAWHPEGNSLFSVYSADGGDSQVSITNLNKGQGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWNEQDDEKWKPKALHRNLHSSAVMGVAGMQQKQMVLSVGADRRIFGYDVRVGRADFKHQVDSKCMSVLPNPSDFNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQAWSPDGHYITSGSADPVIHIFDIRYTAHKPSQSIRAHQKRVFRAMWLQSIPLVISISSDLNIGLHKVYS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01946 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 531 - -
Gma04g01946 533 SMART WD40_4 203 244 IPR001680 GO:0005515
Gma04g01946 533 SMART WD40_4 449 486 IPR001680 GO:0005515
Gma04g01946 533 SMART WD40_4 304 347 IPR001680 GO:0005515
Gma04g01946 533 SMART WD40_4 491 530 IPR001680 GO:0005515
Gma04g01946 533 SMART WD40_4 353 393 IPR001680 GO:0005515
Gma04g01946 533 SUPERFAMILY WD40 repeat-like 210 530 IPR036322 GO:0005515
Gma04g01946 533 Coils Coil 31 65 - -
Gma04g01946 533 MobiDBLite consensus disorder prediction 89 107 - -
Gma04g01946 533 MobiDBLite consensus disorder prediction 118 166 - -
Gma04g01946 533 MobiDBLite consensus disorder prediction 167 185 - -
Gma04g01946 533 MobiDBLite consensus disorder prediction 78 185 - -
Gma04g01946 533 Pfam WD domain, G-beta repeat 463 486 IPR001680 GO:0005515
Gma04g01946 533 Gene3D - 201 357 IPR015943 GO:0005515
Gma04g01946 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 531 - -
Gma04g01946 533 Gene3D - 358 533 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01946 Gma-Chr4 49917358 49923595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01946 - - gmx:102662882 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01946 04 49917358 49923595 Gma06g01458 06 13904800 13912800 GST
Gma08g00070 08 590263 592478 Gma04g01946 04 49917358 49923595 PCT
Gma04g01946 04 49917358 49923595 Gma08g00070 08 590263 592478 PCT