Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00927 ATGACGGCCAGAATGCTGAAAATGTCAGACGACAACAACAAACGAAACGCAGAAACGAGGTTCGTTGGGATTGCCAATGCGCCCACAACACCATCACCATTCCTTCACCCTGACCACGTGGCCGTTGGGTCCCCCATCTCCAGGGTCCCTCTCTCTCCTTCTCCAGCACCACCACCACCACCACCTCCCTCTCCCAGATTCCGGTTGGACCCAGCAGACCCCATGTGGGCTCATGATTTCTCTCTCGCCAACGATTTCTCCAGAATCAACCTCTTCGATCATGCAACCCAAACCGATCATAACATGCCTTTCCAACCCTACGCTTCTTATTTCAATGAAACAGGACCCCTCCCATATCATCGTCATCATGTTAACAACACCCAAACCAACATGGGTTTGGACCCTTACGCTTCTTGTTTCAATGAAACAGGAACCTTCCGAACCCTCCCCTATCATCCCCATGTTAACAATGCGGGTTTATTCGATAAAGGTTACACTTTTCCCATCCCAGATGATCACGTGTATCATCACCTCGTCGATCAGAGGAGGAGGCAGCCACAGGGTACAAGTGATAATAACTACCAGATTCTCGGTGATCGTTACGCGGTGGCTTCACAGTCTCTCGGAGGAGGAGGAGGAAGAGTCAAAAGCCCCATTAGGTTTTCTCAGATAACGCCTCCGTATCAATATCCTCCCAATGCCAATATTACCCCATCACATTATTACGTTGCTGCAAAAGAAAAAGCTGAACTTTCCCCTTTTTTATCTCCTAGGAGAATCATCGGGGAAGACCCTGCTGCAGCGTTTAGGTGTGACAACAATGGTGTTTTCCTACAAGGGAGAGATGCAAAACACTACTTTGAGAATGAGTATGGTTCTTACAGAAGGAGTCCTCGTTATGATGATGATGCAATTCATGGTGTGGGTCGGAGTGTTGTTCGTAAGAACTTTTATTCTTCTGCTGCTGCTCCTTCTGGTCAAAGAAGTGGTGGTGATTTCTCATCAGTGCCCATGCTGCAGGATTTTTATTCTGTGCCTGACGCGCAGTGCTACATTTACAACATGGCAAAGGATCAAAATGGTTGTCGTTTTCTGCAGCGGATGGTGGCTGAGGGGACCTACCAAGATATTTGTATGGTGTTTGAGGGAATCATTGGGAATGTTGTTGAACTCATGATAGACTCTTTCGGGAATTATCTGGTGCAGAAGCTGCTCGATGTTTGCACCGATGATCAACGGCTGCAGATTGTGCTCATGCTGACCAATCACCCAGCCCAGCTCGTTAGAGTCTCTTTAAATACTCACGGAACACGCGTGGTGCAGAAGTTGATCGAGACCCTCACCTCCACTGAACAAGTTTCATTGGTGAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAACCATCTCATTCAACGTTGCTTGCAATGCCTTAGCTTTGCTTATCATTTCTCTTTATCGTCATGGCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCAGCATGGATGTTTTGTATTGCAACGTTGCATTCACCACTCTGTAGGAAAGAATCGAGATAAGCTGGTCACAGAAATATGCAAACATGGACTTCTCCTGGCTCAGGATGCATTTGGAAATTATGTTGTTCAATATGTTATAGAGTCGGATACCGCAGCTGTCTCAGCCAAACTACTTAGTCAGTTCAAAGAGAACTTTGTAATGTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGCCTTCAGCATATTGGAGACAGCAGATCAAGGATAGTTCGAGAATTGTTGTCTGTTCCTCGCTTTGAACAGTTGTTGCAAGATCAATATGCCAATTATGTCATTCAATCTGCTCTACTTTTTACAAAGGGGCCTCTGCATGCATCTTTGGCTGAAGCTGTTCGTCTTCACAAAACGTTGTGCACCAGTCCATATTGCAAGAGGATTTTTTCAGGAAACCTGCTTAAGAAGTGA 2013 0.4545 MTARMLKMSDDNNKRNAETRFVGIANAPTTPSPFLHPDHVAVGSPISRVPLSPSPAPPPPPPPSPRFRLDPADPMWAHDFSLANDFSRINLFDHATQTDHNMPFQPYASYFNETGPLPYHRHHVNNTQTNMGLDPYASCFNETGTFRTLPYHPHVNNAGLFDKGYTFPIPDDHVYHHLVDQRRRQPQGTSDNNYQILGDRYAVASQSLGGGGGRVKSPIRFSQITPPYQYPPNANITPSHYYVAAKEKAELSPFLSPRRIIGEDPAAAFRCDNNGVFLQGRDAKHYFENEYGSYRRSPRYDDDAIHGVGRSVVRKNFYSSAAAPSGQRSGGDFSSVPMLQDFYSVPDAQCYIYNMAKDQNGCRFLQRMVAEGTYQDICMVFEGIIGNVVELMIDSFGNYLVQKLLDVCTDDQRLQIVLMLTNHPAQLVRVSLNTHGTRVVQKLIETLTSTEQVSLVKSAIQPGFLDLIKDLNGNHLIQRCLQCLSFAYHFSLSSWQFIFDAAVKFCVEIATHQHGCFVLQRCIHHSVGKNRDKLVTEICKHGLLLAQDAFGNYVVQYVIESDTAAVSAKLLSQFKENFVMLSTQKFSSHVVEKCLQHIGDSRSRIVRELLSVPRFEQLLQDQYANYVIQSALLFTKGPLHASLAEAVRLHKTLCTSPYCKRIFSGNLLKK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00927 670 SMART pum_5 459 494 IPR001313 GO:0003723
Gma06g00927 670 SMART pum_5 501 536 IPR001313 GO:0003723
Gma06g00927 670 SMART pum_5 610 645 IPR001313 GO:0003723
Gma06g00927 670 SMART pum_5 573 607 IPR001313 GO:0003723
Gma06g00927 670 SMART pum_5 419 457 IPR001313 GO:0003723
Gma06g00927 670 SMART pum_5 347 382 IPR001313 GO:0003723
Gma06g00927 670 SMART pum_5 537 572 IPR001313 GO:0003723
Gma06g00927 670 SMART pum_5 383 418 IPR001313 GO:0003723
Gma06g00927 670 MobiDBLite consensus disorder prediction 50 67 - -
Gma06g00927 670 ProSiteProfiles Pumilio RNA-binding repeat profile. 383 419 IPR001313 GO:0003723
Gma06g00927 670 MobiDBLite consensus disorder prediction 25 67 - -
Gma06g00927 670 ProSiteProfiles Pumilio RNA-binding repeat profile. 537 572 IPR001313 GO:0003723
Gma06g00927 670 SUPERFAMILY ARM repeat 349 663 IPR016024 -
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 544 564 IPR001313 GO:0003723
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 426 455 IPR001313 GO:0003723
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 352 385 IPR001313 GO:0003723
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 617 631 IPR001313 GO:0003723
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 577 610 IPR001313 GO:0003723
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 506 539 IPR001313 GO:0003723
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 387 417 IPR001313 GO:0003723
Gma06g00927 670 Pfam Pumilio-family RNA binding repeat 464 485 IPR001313 GO:0003723
Gma06g00927 670 Gene3D - 339 667 IPR011989 -
Gma06g00927 670 ProSiteProfiles Pumilio RNA-binding repeat profile. 422 457 IPR001313 GO:0003723
Gma06g00927 670 ProSiteProfiles Pumilio RNA-binding repeat profile. 573 611 IPR001313 GO:0003723
Gma06g00927 670 ProSiteProfiles Pumilio RNA-binding repeat profile. 501 536 IPR001313 GO:0003723
Gma06g00927 670 CDD Pumilio 342 664 IPR033712 GO:0003723
Gma06g00927 670 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 115 280 - -
Gma06g00927 670 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 284 670 - -
Gma06g00927 670 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 115 280 - -
Gma06g00927 670 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 284 670 - -
Gma06g00927 670 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 318 670 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00927 Gma-Chr6 8560799 8564101 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00927 - - gmx:100813309 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00927 06 8560799 8564101 Gma06g00927 06 8560799 8564101 ECH
Gma04g00947 04 9671196 9674561 Gma06g00927 06 8560799 8564101 GST
Gma14g01724 14 46766716 46771461 Gma06g00927 06 8560799 8564101 PCT
Gma06g00927 06 8560799 8564101 Gma14g01724 14 46766716 46771461 PCT