Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00947 ATGGATTCCCCCATGCTGAAGATGTCAGACGACAACAACAAACGAAACGCAGCAGAGGACGCAGAAACAAGGTTCGTTGGGATTCCCACAACACCATCACCATTCCTTCACCCTGACCATGTGGCCGTTGGGTCCCCCATCACCAGGGTCCCTCTCGCTCCTTCTCCCGCACCACCACCTCCCTCTCCCTGCAGATTCTGGTTGGACCCTGCATACCCCGTTTGGGGCCATGATTTCTCCAGAATCAACTTCTTCGATGCAACCCAAACCGATAACATGCCTTTCGAACCCTACGCTTCTTATTTCAATGAAACAGGAACCCTCCCATATGTTAACAACACCCAAACCAACATGGGTCTGGACCCTTACGCTTTTTGTTTCAACGAAACAGGAACCTTCCCATCCCTTCCCTATCATCAGCATGTCAACAATGTGCCTTTATTCGATAAAGGTTACACTCTTGGCACCCCAGATGATCACGACAACCTCGTGTATCATCACCTCGTCGATCAGAGGAGGAGGCAGCTAGAGGGTACATCTGATAATAACTATCAGATTCTCCGTGATCGTTACATGGCGGCTTCACAGTCTCTCCACGATGGAGGAGGAGTCAAAAGTCCCATTAGGTTTTCTCAGATAACGCCTCAACATCAATATCCTCCCAATGCCAATATTACCCCATCACATTATTACGTTGCTGCAAAACAAAAAGCTGAACTTTCCCCTTTTCTATCTCCGAGGAGAATCGGGGGAGACCCTGCTACAGCGTTTAGGTATGACAACAATGACGTTTTTCTACAAGGGAGAGATGCAAAACACTACTTTGAGAATGGGTACGGTTCTTACAGAAGGAGTCCTCGCGATGATGATGCTGCTGCAATTCATGACGTGGGTGGGAGTGTTGTTCCTAAGAACTTTTATTCTGCTGCTGCTCCTTCTGGTCAAAGAAGTGGTGGTGGTGATTTCTCATCACTGCCCATGCTGCTGGATTTTTATTCTGTGCCTGATGCGCAGTGCTACATTTACAACCTGGCAAAGGATCAGAATGGTTGTCGTTTTCTGCAGCGGATGGTGGATGAGGGGACCTACCAGGATATATGTATCGTGTTTGAGGGAATCATTGGGAATGTTGTTGAACTCATGATAGACTCTTTCGGGAATTATCTTGTGCAGAAGCTGCTCGATGTTTGCACCGACGATCAACTCCTGCAGATTGTGCTCTTGTTGACCAATCACCCAACCCAGCTCGTTAGAATCTCTTTAAATACTCACGGCACACGCGTGGTGCAGAAGTTGATCGAGACCCTCACCTCCGATGAACAAGTTTCACTGGTGAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATTTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCTTTAGCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCGGCATGGATGTTGTGTATTGCAATGTTGCATTCATCACTCAACAGGAAAGAATCGGGATAAGCTGGTCACAGAAATATGCAAACATGGACTTCTCCTCGCTCAGGATGCATTTGGAAATTATGTTGTTCAGTATGTTATAGAATCGGATACCCCAGCTGTCTCAGTCAAACTGCTTAGCCAGTTCAAAGGAAGCTTTGTAATTTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGCCTTAAGCATATCGGAAACAGCAGGCCAAGGATAGTTGGAGAGTTAACGTCTGTTCCTCGCTTTGAACAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCGATCTGCTTTACTTTTTACAAAGGGCCCTCTGCATGCATCTTTGGCTGAAATCGTTCGTGCTCACAAAGGGTTGCGCACCAGTCCATATTGCAAGAGGATTTTCTCGGGAAGCTTGCTCAAAAAGTGA 1962 0.4597 MDSPMLKMSDDNNKRNAAEDAETRFVGIPTTPSPFLHPDHVAVGSPITRVPLAPSPAPPPPSPCRFWLDPAYPVWGHDFSRINFFDATQTDNMPFEPYASYFNETGTLPYVNNTQTNMGLDPYAFCFNETGTFPSLPYHQHVNNVPLFDKGYTLGTPDDHDNLVYHHLVDQRRRQLEGTSDNNYQILRDRYMAASQSLHDGGGVKSPIRFSQITPQHQYPPNANITPSHYYVAAKQKAELSPFLSPRRIGGDPATAFRYDNNDVFLQGRDAKHYFENGYGSYRRSPRDDDAAAIHDVGGSVVPKNFYSAAAPSGQRSGGGDFSSLPMLLDFYSVPDAQCYIYNLAKDQNGCRFLQRMVDEGTYQDICIVFEGIIGNVVELMIDSFGNYLVQKLLDVCTDDQLLQIVLLLTNHPTQLVRISLNTHGTRVVQKLIETLTSDEQVSLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSCQDNQFIFDAAVKFCVEIATHRHGCCVLQCCIHHSTGKNRDKLVTEICKHGLLLAQDAFGNYVVQYVIESDTPAVSVKLLSQFKGSFVILSTQKFSSHVVEKCLKHIGNSRPRIVGELTSVPRFEQLLQDPYANYVIRSALLFTKGPLHASLAEIVRAHKGLRTSPYCKRIFSGSLLKK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00947 653 CDD Pumilio 331 647 IPR033712 GO:0003723
Gma04g00947 653 SUPERFAMILY ARM repeat 338 646 IPR016024 -
Gma04g00947 653 Pfam Pumilio-family RNA binding repeat 453 483 IPR001313 GO:0003723
Gma04g00947 653 Pfam Pumilio-family RNA binding repeat 376 406 IPR001313 GO:0003723
Gma04g00947 653 Pfam Pumilio-family RNA binding repeat 527 550 IPR001313 GO:0003723
Gma04g00947 653 Pfam Pumilio-family RNA binding repeat 415 444 IPR001313 GO:0003723
Gma04g00947 653 Pfam Pumilio-family RNA binding repeat 489 522 IPR001313 GO:0003723
Gma04g00947 653 Pfam Pumilio-family RNA binding repeat 341 373 IPR001313 GO:0003723
Gma04g00947 653 Pfam Pumilio-family RNA binding repeat 561 581 IPR001313 GO:0003723
Gma04g00947 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 372 407 IPR001313 GO:0003723
Gma04g00947 653 MobiDBLite consensus disorder prediction 1 33 - -
Gma04g00947 653 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 269 - -
Gma04g00947 653 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 310 653 - -
Gma04g00947 653 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 109 269 - -
Gma04g00947 653 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 310 653 - -
Gma04g00947 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 520 555 IPR001313 GO:0003723
Gma04g00947 653 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 311 653 IPR033133 GO:0003723
Gma04g00947 653 MobiDBLite consensus disorder prediction 7 21 - -
Gma04g00947 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 448 483 IPR001313 GO:0003723
Gma04g00947 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 408 446 IPR001313 GO:0003723
Gma04g00947 653 Gene3D - 330 650 IPR011989 -
Gma04g00947 653 SMART pum_5 336 371 IPR001313 GO:0003723
Gma04g00947 653 SMART pum_5 448 483 IPR001313 GO:0003723
Gma04g00947 653 SMART pum_5 408 446 IPR001313 GO:0003723
Gma04g00947 653 SMART pum_5 520 555 IPR001313 GO:0003723
Gma04g00947 653 SMART pum_5 372 407 IPR001313 GO:0003723
Gma04g00947 653 SMART pum_5 484 519 IPR001313 GO:0003723
Gma04g00947 653 SMART pum_5 593 628 IPR001313 GO:0003723
Gma04g00947 653 SMART pum_5 556 590 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00947 Gma-Chr4 9671196 9674561 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00947 - - gmx:100784921 1336.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00947 04 9671196 9674561 Gma04g00947 04 9671196 9674561 ECH
Gma04g00947 04 9671196 9674561 Gma06g00927 06 8560799 8564101 GST
Gma14g01724 14 46766716 46771461 Gma04g00947 04 9671196 9674561 PCT
Gma04g00947 04 9671196 9674561 Gma14g01724 14 46766716 46771461 PCT