Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00918 ATGTCAGGTGGTGGATGCAGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGATAGAAGACAATCCAGCACTGACAGCAGGAGTGAGAGCTGGTGCTGTTGTTGCAGTTTTCATATGGGCACCTGAAGAAGAAGGACAATACTACCCTGGCAGGGTCTCTAGATGGTGGCTCAAGAACAGTTTGGCTCACCTTGATTCCTCTCTCAGGAATCTTGGCACTCCTCTCATCACTAAGCGATCCACTGATACTCTTTCTTCTCTATTTGAGGTTGTTAAGTCCACTGGAGCCACTCAACTCTTTTTTAATCATTTATATGATCCTCTGTCACTTGTCAGGGATCACCGAGCAAAGGAGGTTCTGACTGCTCAGGGCATAACAGTACGTTCCTTCAACGCGGACTTATTATATGAACCATGGGATGTGAATGATGCACATGGCCGACCATTCACAACTTTTGCTGCTTTTTGGGAAAGATGTCTTAGCATGCCTTATGACCCTGAGTCACCTCTTCTCCCACCTAAAAGGATAATTCCAGGTGATGCATCGAGGTGCCCTAGTGATACATTGCTGTTTGAAGATGAATTAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCGTGGTCACCCGGGTGGAGCAATGCTAACAAGGCATTGACAACATTCATAAATGGTCCACTGATTGAGTACTCAAAAAACCGCAGGAAAGCAGACAGTGCCACTACCTCACTTCTCTCACCCCATTTGCACTTTGGTGAGTTGAGTGTCAAGAAGGTCTTCCATCTAGTCCGCATCAAACAAGTTTTGTGGGCCAACGAAGGAAACAAAGCTGGTGAAGAGAGCGTGAACTTGTTCCTCAAATCTATAGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCATCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAATGAAGGATATTTTAAGGCATGGAGACAAGGAAGAACTGGGTACCCTTTGGTGGATGCTGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGAATACGTGTTGTAGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCCGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTAGTCTCCCTGATGGTCGTGAAATTGACCGAATAGATAATCCACAGTTTGAGGGCTACAAATTCGACCCAAATGGAGAATACGTGCGACGCTGGCTTCCAGAACTTTCAAGATTACCCACTGAGTGGATACATCATCCTTGGAATGCACCAGAGTCAGTGCTACAAGCTGCTGGAATTGAGCTAGGATCGAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAAACAGATTACTAGAAGCACTATCAAAAATGTGGCAACAAGAGGCAGCTTCAAGAGCTGCAATGGAAAATGGAACGGAGGAAGGACTTGGAGACTCTTCTGAATCAGTTCCTGCTGCTTTTCCTCAAGACACGCGAATGGAGGAAACTCATGAACCTGTTAGGAACAATCCCCTTCCCATTGCTCGGCGCTACCAAGATCAGATGGTTCCAAGCATCACTTCTTCCTTGTTGAGAGTGGAAGAGGAAGAAACGTCTTCTGATCTTCGAAACTCAGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAGTAACTGCAAATGCACAACAAAATGCAGGAGTTGCATTGAACGAACGGATGTTGCAGACCACTAATAGGAATACACAAACCCAATACAATACTACGATGGACCTGAGAAATGTAGCTGATGATTCTGCAGTAGAATCTTCAAGTGGTACCAGGAGAGAAAGGGATGGAGGTTTAGTTCCAGTATGGTCTCCACCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATAACAAGCAGTTCATCTTACTTGCAAAGGCATCCTCAATCTCACCAAATGCTGAATTGGAAGCAGCTACCTCAAACTGGGTAA 2049 0.4539 MSGGGCSSIVWFRRDLRIEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTPLITKRSTDTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLEALSKMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDTRMEETHEPVRNNPLPIARRYQDQMVPSITSSLLRVEEEETSSDLRNSAEESSRAEVPVTANAQQNAGVALNERMLQTTNRNTQTQYNTTMDLRNVADDSAVESSSGTRRERDGGLVPVWSPPASSYSEQFVGDENGITSSSSYLQRHPQSHQMLNWKQLPQTG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00918 682 Gene3D - 135 294 - -
Gma06g00918 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 135 IPR006050 -
Gma06g00918 682 MobiDBLite consensus disorder prediction 641 682 - -
Gma06g00918 682 PANTHER CRYPTOCHROME-1 5 598 - -
Gma06g00918 682 PRINTS DNA photolyase signature 333 349 IPR002081 -
Gma06g00918 682 PRINTS DNA photolyase signature 353 371 IPR002081 -
Gma06g00918 682 PRINTS DNA photolyase signature 392 406 IPR002081 -
Gma06g00918 682 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 8 483 IPR014134 GO:0009785|GO:0009882
Gma06g00918 682 MobiDBLite consensus disorder prediction 615 682 - -
Gma06g00918 682 PANTHER CRYPTOCHROME 5 598 IPR002081 -
Gma06g00918 682 Pfam DNA photolyase 8 163 IPR006050 -
Gma06g00918 682 Pfam Blue/Ultraviolet sensing protein C terminal 512 627 IPR020978 -
Gma06g00918 682 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Gma06g00918 682 Pfam FAD binding domain of DNA photolyase 284 483 IPR005101 -
Gma06g00918 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Gma06g00918 682 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Gma06g00918 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 489 IPR036134 -
Gma06g00918 682 Gene3D HUPs 9 207 IPR014729 -
Gma06g00918 682 MobiDBLite consensus disorder prediction 555 569 - -
Gma06g00918 682 MobiDBLite consensus disorder prediction 492 580 - -
Gma06g00918 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 8 179 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00918 Gma-Chr6 8478602 8484040 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00918 K12118 - gmx:100797839 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00918 06 8478602 8484040 Gma06g00918 06 8478602 8484040 ECH
Gma04g00936 04 9485648 9489210 Gma06g00918 06 8478602 8484040 GST
Gma14g01737 14 47067714 47073478 Gma06g00918 06 8478602 8484040 PCT
Gma06g00918 06 8478602 8484040 Gma14g01737 14 47067714 47073478 PCT