Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00936 ATGTCAGGTGGTGGAGGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGATAGAAGACAATCCAGCACTGACAGCAGGAGTGAGAGCTGGTGCTGTGGTTGCAGTTTTCGTATGGGCACCTGAAGAAGAAGGTCAATACTACCCTGGCAGGGTCTCTAGATGGTGGCTCAAGAACAGTTTGGCTCATCTTCATTCCTCTCTGAGGAATCTTGGCACTCCTCTCATCACTAAGCGATCCACTGACACTCTTTCTTCTCTTCTTGAGGTTGTTAAGTCCACTGGAGCCACTCAACTTTTTTTTAATCATTTGTATGATCCCCTGTCACTTGTCAGGGATCACCGAGCAAAGGAGGTTCTGACTGCTCAGGGCATAACAGTACGTTCCTTCAATGCGGATTTATTATATGAACCATGGGAAGTGAATGATGCACATGGCCGACCATTCACAACTTTTGCTGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCTGAGTCACCTCTTCTCCCACCTAAAAGGATAATTCCAGGTGATGCATCCAGGTGTCCTAGTGATACATTGCTGTTTGAAGATGAATTAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCTGGGTGGAGCAATGCTAACAAGGCATTGACAACCTTCATAAATGGTCCACTGATTGAGTACTCAAAAAACCGCAGGAAAGCAGACAGTGCAACTACCTCACTTCTGTCCCCCCATTTGCACTTTGGTGAGTTGAGTGTTAAGAAGGTCTTCCATCTTGTCCGCATCAAACAAGTTTTGTGGGCCAACGAAGGAAACAAAGCCGGCGAAGAGAGCGTGAACTTGTTCCTCAAATCTATAGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAACGAAGGCTATTTTAAGGCATGGAGACAAGGCAGGACTGGGTACCCTTTAGTGGATGCTGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGAATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGATGGGGAATGAAATATTTCTGGGACACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTAGTCTCCCTGATGGTCGTGAAATTGACCGAATAGATAATCCACAGTTTGAGGGATACAAATTCGACCCTAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGATTACCAACCGAGTGGATACATCATCCTTGGAATGCACCAGAGTCAGTGCTACAAGCTGCTGGAATTGAGTTAGGATCGAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACCAGATTACTAGAAGCGCTATCAGAAATGTGGCAACAAGAGGCAGCTTCAAGAGCTGCAATGGAGAATGGAACTGAGGAAGGACTTGGAGACTCTTCTGAATCCGTTCCTGCTGCTTTTCCTCAAGACATGCAAATGGAGGAAACTCATGAGCCTGTTAGGAACAATCCCCTTCCTGTTGCTCGGCGCTACCAGGATCAGATGGTTCCAAGCATCACTTCTTCCTTGTTGAGAGTGGAAGAGGAAGAAACTTCTTCTGATCTTCGACACTCGGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAGTAACTGCAAATGCACAACAAAATGTAGGAGTTACATTGAATGAACGGATGCTGCAGACCACTAATAGGAATGCACAAACACAATACAATACTACAATGGAGCTGAGAAATGTAGCTGAAGATTCAGCAGTAGAATCTTCAAGTGGTACCAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCTCCCCCAGCTTCTAGTTACTCAGAACAATTTGTAGGAGAGGAAAATGGTATAACAAACAGTTCATCTTTCTTGCAAAGGCATCCTCAGTCTCACCAAATGCTGAATTGGAGGCAGCTACCTCAGACTGGGTAA 2046 0.4589 MSGGGGSIVWFRRDLRIEDNPALTAGVRAGAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLHSSLRNLGTPLITKRSTDTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEALSEMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRNNPLPVARRYQDQMVPSITSSLLRVEEEETSSDLRHSAEESSRAEVPVTANAQQNVGVTLNERMLQTTNRNAQTQYNTTMELRNVAEDSAVESSSGTRRERDGGVVPVWSPPASSYSEQFVGEENGITNSSSFLQRHPQSHQMLNWRQLPQTG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00936 681 Gene3D HUPs 8 206 IPR014729 -
Gma04g00936 681 MobiDBLite consensus disorder prediction 640 681 - -
Gma04g00936 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Gma04g00936 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Gma04g00936 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Gma04g00936 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Gma04g00936 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Gma04g00936 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Gma04g00936 681 PANTHER CRYPTOCHROME 1 594 IPR002081 -
Gma04g00936 681 MobiDBLite consensus disorder prediction 551 574 - -
Gma04g00936 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Gma04g00936 681 PANTHER CRYPTOCHROME-1 1 594 - -
Gma04g00936 681 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 7 482 IPR014134 GO:0009785|GO:0009882
Gma04g00936 681 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Gma04g00936 681 Pfam DNA photolyase 7 162 IPR006050 -
Gma04g00936 681 Gene3D - 134 293 - -
Gma04g00936 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Gma04g00936 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Gma04g00936 681 MobiDBLite consensus disorder prediction 554 570 - -
Gma04g00936 681 MobiDBLite consensus disorder prediction 615 681 - -
Gma04g00936 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00936 Gma-Chr4 9485648 9489210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00936 K12118 - gmx:100233233 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00936 04 9485648 9489210 Gma04g00936 04 9485648 9489210 ECH
Gma04g00936 04 9485648 9489210 Gma06g00918 06 8478602 8484040 GST
Gma14g01737 14 47067714 47073478 Gma04g00936 04 9485648 9489210 PCT
Gma04g00936 04 9485648 9489210 Gma14g01737 14 47067714 47073478 PCT