Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01966 ATGGAAGCAGTGAGAGCTGATCGAGGAGGAGCAATAGGTCTAGGTCAAGGTGATGGCGTAGCCAAGGACAGCACTGAGACTGAACTCACCAAAATCCGTCTCCTCAGGGCAATTGTTGAAACCCGTGATCCCTCTTCCAAGGAAGAGGATGATTTTATGATTAGAAGATTCCTGCGTGCTCGTGATTTAGATGTAGAGAAGGCTTCGGCAATGCTCCTCAAGTACTTGAAATGGAGAAATTCATTTGTTCCAAATGGCTCTGTATCTGTGTCAGATGTTCCTAACGAACTTGCACAAGATAAGGTGTTCATGCAAGGACACGACAAGATAGGTCGACCTATACTTATGGTCTTCGGTGGAAGACATTTTCAGAACAAGGATGGTCTTGATGAATTCAAGCGATTTGTTGTTTATGTTCTTGATAAAGTATGTGCAAGTATGCCACCTGGGCAAGAAAAGTTTGTTGGTATAGCAGAACTTAAGGGATGGGGATACTCAAACAGTGACGTGCGTGGATATCTTAGTGCTCTATCCATTTTGCAGGATTACTACCCAGAGAGATTGGGGAAGTTGTTTATTGTGAACGCACCATACATCTTTATGAAAGTGTGGCAAATTGTTTACCCATTCATTGACAACAAAACCAAGAAAAAGATAGTATTTGTGGAGAAAAATAAGGTGAAATCAACACTGCTAGAAGAGATGGAGGAAAGTCAGGTCCCAGAGATATTCGGTGGCTCACTGCCATTAGTCCCAATTCAAGATAGCTAA 771 0.4241 MEAVRADRGGAIGLGQGDGVAKDSTETELTKIRLLRAIVETRDPSSKEEDDFMIRRFLRARDLDVEKASAMLLKYLKWRNSFVPNGSVSVSDVPNELAQDKVFMQGHDKIGRPILMVFGGRHFQNKDGLDEFKRFVVYVLDKVCASMPPGQEKFVGIAELKGWGYSNSDVRGYLSALSILQDYYPERLGKLFIVNAPYIFMKVWQIVYPFIDNKTKKKIVFVEKNKVKSTLLEEMEESQVPEIFGGSLPLVPIQDS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01966 256 SMART CRAL_TRIO_N_2 50 75 IPR011074 -
Gma05g01966 256 CDD SEC14 102 246 IPR001251 -
Gma05g01966 256 PANTHER OS03G0850700 PROTEIN 22 256 - -
Gma05g01966 256 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 90 252 IPR001251 -
Gma05g01966 256 Gene3D - 20 255 IPR036865 -
Gma05g01966 256 SUPERFAMILY CRAL/TRIO N-terminal domain 21 85 IPR036273 -
Gma05g01966 256 SMART sec14_4 96 249 IPR001251 -
Gma05g01966 256 Pfam CRAL/TRIO domain 101 246 IPR001251 -
Gma05g01966 256 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 22 256 - -
Gma05g01966 256 SUPERFAMILY CRAL/TRIO domain 93 249 IPR036865 -
Gma05g01966 256 Coils Coil 256 256 - -
Gma05g01966 256 Pfam CRAL/TRIO, N-terminal domain 48 73 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01966 Gma-Chr5 40980869 40987765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01966 56 242 Acyl Lipid Metabolism Gene Families AT5G47730 28.079 8.67e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01966 - - gmx:548015 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01966 05 40980869 40987765 Gma05g01966 05 40980869 40987765 ECH
Gma05g01966 05 40980869 40987765 Gma08g00068 08 561378 566964 GST
Gma05g01966 05 40980869 40987765 Gma04g01954 04 49997711 50000713 PCT
Gma05g01966 05 40980869 40987765 Gma06g01454 06 13846394 13849406 PCT
Gma04g01954 04 49997711 50000713 Gma05g01966 05 40980869 40987765 PCT
Gma06g01454 06 13846394 13849406 Gma05g01966 05 40980869 40987765 PCT