Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00190 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAACAACAAAGGGTGGTGGAGGGCCAGGGAAGAGGTGGGGTCACACCTGCAACGCCGTCAAAAGTGGCAGACTTGTCTATGTATTTGGTGGTTACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTCGACACTGTGAAGCAGGCATGGAGCCAACCCGCTTTAAAAGGCTCCCCACCTACACCTAGGGACAGCCATACATGCACAGCCGTTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGAATGAACCCTCTCAAGGATTTGCACATATTAGACACTTCTTTGCAAACATGGGTTTCTCCAACCATAAGAGGAGAAGGACCACCAGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGACTATACATCTTTGGAGGTTGTGGAAAATCTGCAGATAATAATAATGAGCTCTACTACAATGATCTTTACATATTAAATACAGAGACATTTGTTTGGAAGTGTGCTACAACGTCAGGCACTCCACCATCTCCTCGTGATAGCCACAGTTGTTCATCTTGGAAAAACAAAATTATTGTGATAGGGGGTGAAGATGGGCATGATTATTATTTGTCTGACATCCACATTCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCTGGCCAATTGTTGCCACCTCGAGCTGGTCATTCCACTGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAAAATCTTTATAATGACCTTTATATGCTCGATATTGATACTGGTGTTTGGACAAATGTTACAACTGCAACAAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAGGAGTGGTGTTCTTATATTCATCGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCACGGGAAAGTGAACAGAGACCAGAAAAATTATCTTTAAAGAAGCAATTGAAACTGAAATGCCTAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTCTCGTTAGATATGGAGTGGGTTCTGATGTGGGACAGATCATGACAGTGTTGAATTATAGCCAATCAAGTAGAGTAAATATCCCAGTAAACCAATCCCCACCTCCCGGAAAAAAAATGTTTGAAGCCAAGGTTACTGAAAATATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAACCTCTTCGTGGAATTCTGTTTTTAAACAAGCCTAACTCTCTGTACTCAGGTGCTCATACTTGCAGTAGGAAAAGGACTGTCGGTGAAATTGATAGTGTTGTCTCAAATGGTATACATTCTAACCAATTAAAGACTCCTAAAGTGGTCAAGCAAAATCAAATGGAAAACCGAGAAGCATCTCGTGGAGACTGTTCCGAATGTCATGAACACCGCACCGAATCCATTGCTGTGCTTATGTCAAGTAACCCAATGACTGCCAATCCTTCTGATACCCATAAGGTTTCTGCCAACCCAGAACCAGAAGCTGCGGCTTTGAATCGAAATGATGAAAAACATGAAACACCTAAATCTTTAATTGGAAACTTGACAAATGATGGAGCAAATGATGTGACAAGTTCCCAAGGTGAGGTGCAAACAAGTGATCAAACAAATGTGCTAATTTCCAACTTTGAAGTTCCAAGAGACAATAAAACAAGTGATGCTCCAAACTACAACACTGAATTTCTGAAACCTGCTGCAGCTGAGAGCGCTTTGCATCTGTCAAATCAAGTTTCAGTGGCGGATTCCGcaactccacaactccacaactccacaactccaACGACAAGAGAATGCAGTGAATCAGCAAAATTAATTTGA 1893 0.4099 MRWEKVEVKAIGTTTKGGGGPGKRWGHTCNAVKSGRLVYVFGGYGKDNCQTNQVHVFDTVKQAWSQPALKGSPPTPRDSHTCTAVGDNLFVFGGTDGMNPLKDLHILDTSLQTWVSPTIRGEGPPAREGHSAAVVGKRLYIFGGCGKSADNNNELYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDIHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTATNGPSARFSVAGDCLDPFRSGVLIFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLKKQLKLKCLEQNPNPSQNQVLVRYGVGSDVGQIMTVLNYSQSSRVNIPVNQSPPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNSLYSGAHTCSRKRTVGEIDSVVSNGIHSNQLKTPKVVKQNQMENREASRGDCSECHEHRTESIAVLMSSNPMTANPSDTHKVSANPEPEAAALNRNDEKHETPKSLIGNLTNDGANDVTSSQGEVQTSDQTNVLISNFEVPRDNKTSDAPNYNTEFLKPAAAESALHLSNQVSVADSATPQLHNSTTPTTRECSESAKLI 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00190 630 Pfam Galactose oxidase, central domain 36 84 - -
Gma05g00190 630 MobiDBLite consensus disorder prediction 609 624 - -
Gma05g00190 630 SUPERFAMILY Galactose oxidase, central domain 206 314 IPR011043 -
Gma05g00190 630 MobiDBLite consensus disorder prediction 535 559 - -
Gma05g00190 630 PANTHER KELCH REPEAT DOMAIN 1 444 - -
Gma05g00190 630 SMART kelc_smart 245 291 IPR006652 GO:0005515
Gma05g00190 630 SMART kelc_smart 194 244 IPR006652 GO:0005515
Gma05g00190 630 SMART kelc_smart 37 87 IPR006652 GO:0005515
Gma05g00190 630 SMART kelc_smart 88 137 IPR006652 GO:0005515
Gma05g00190 630 MobiDBLite consensus disorder prediction 609 630 - -
Gma05g00190 630 Pfam Galactose oxidase, central domain 182 227 - -
Gma05g00190 630 Pfam Galactose oxidase, central domain 233 282 - -
Gma05g00190 630 Pfam Kelch motif 124 168 - -
Gma05g00190 630 MobiDBLite consensus disorder prediction 522 559 - -
Gma05g00190 630 Gene3D - 176 328 IPR015915 GO:0005515
Gma05g00190 630 SUPERFAMILY Galactose oxidase, central domain 13 225 IPR011043 -
Gma05g00190 630 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 444 - -
Gma05g00190 630 Gene3D - 2 175 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00190 Gma-Chr5 1783231 1791076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00190 51 310 Acyl Lipid Metabolism Gene Families AT3G05420 28.364 3.71e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00190 - - gmx:100820222 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00190 05 1783231 1791076 Gma05g00190 05 1783231 1791076 ECH
Gma17g00754 17 6340618 6348585 Gma05g00190 05 1783231 1791076 GST
Gma05g00190 05 1783231 1791076 Gma04g01551 04 42011696 42018655 PCT
Gma04g01551 04 42011696 42018655 Gma05g00190 05 1783231 1791076 PCT