Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00084 ATGAGCTGGTATGGAGGAGATTGGATGTGTGGTGTTTGCGAGCACATAAATTTCAAGAAGAGGGAAACATGTCAGAGTTGTAGATACCCCAAGTATGGGGGAACTGACCCTTCAACCTACAGATACAACAAGACTGAAGCATTAGCAGGGGATTGGTTCTGCAACTGTGGAGCTCATAACTATGCCAGTAGATCAAGCTGCTATAGATGTGGTGCAATCAAAGATTATTACTGTTCAGGATATGGCACAAAATCTGGAGAATATGGATCTTACACTTTTCCCCTAGGATGGAAGAATGGAGACTGGCTTTGCCCAAGAATCGGCTGTGGAGTACATAATTATGCTAGCAGGACAGAGTGCTTCAAATGCAAAGTGCCAAGGGATTTTGGTGAGAAAGTTTAA 402 0.4328 MSWYGGDWMCGVCEHINFKKRETCQSCRYPKYGGTDPSTYRYNKTEALAGDWFCNCGAHNYASRSSCYRCGAIKDYYCSGYGTKSGEYGSYTFPLGWKNGDWLCPRIGCGVHNYASRTECFKCKVPRDFGEKV 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00084 133 SUPERFAMILY Ran binding protein zinc finger-like 47 75 IPR036443 -
Gma05g00084 133 Pfam Zn-finger in Ran binding protein and others 98 127 IPR001876 -
Gma05g00084 133 Pfam Zn-finger in Ran binding protein and others 49 72 IPR001876 -
Gma05g00084 133 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 130 - -
Gma05g00084 133 Gene3D - 41 76 - -
Gma05g00084 133 Gene3D - 93 129 - -
Gma05g00084 133 Gene3D - 1 34 - -
Gma05g00084 133 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Gma05g00084 133 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Gma05g00084 133 PANTHER ZINC FINGER PROTEIN 1 130 - -
Gma05g00084 133 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Gma05g00084 133 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Gma05g00084 133 SUPERFAMILY Ran binding protein zinc finger-like 94 129 IPR036443 -
Gma05g00084 133 SMART zf_4 6 30 IPR001876 -
Gma05g00084 133 SMART zf_4 100 126 IPR001876 -
Gma05g00084 133 SMART zf_4 50 73 IPR001876 -
Gma05g00084 133 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00084 Gma-Chr5 808876 809699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00084 6 70 EF-hand Containing Proteins AT1G55040 30.303 6.72e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00084 - - gmx:100812750 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00084 05 808876 809699 Gma08g01926 08 17313630 17315527 ECH
Gma05g00084 05 808876 809699 Gma04g00633 04 5801733 5803055 ECH
Gma05g00084 05 808876 809699 Gma05g00084 05 808876 809699 ECH