Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma04g01908 | ATGGCAAGTCAAAGCGGTGCCTCTAGAAGGAGTATTTCGTCGTCGACGAGGAGAGCCTCTGAATCAGGGGCGCCTCGAAAATCAATTTCCTCTTCGCGACCTTTGGCATTGGCCGGAGAGCGGACTGTGAAATCATTGCGACTTACAAAGGCCCTGACAGTACCTGAAACAACAACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTCATGACTAGGAATCCGGTATTTGTTCTTTCTGAAACTCTTGCTGCAGAAGCCCTCCAAAAGATGGTGCAAGGGAAATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTTTGCATGATGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGAACATCAGACTCCAATACATCATTCATTGAGACTCTGCGGGAGCAAATATTCAAGCCATCATTGTCCACAATCATTCCCGAGAATTCAAAACTTGTAACAGTATCACCAACAGATTCAGTTCTGACAACAACAAAGAAGATGGTTGAATTTCGTGCAAGTTGTGCAGTTGTGACAGTTAATGACAAACCTCGTGGCATCTTTACTTCAAAAGATATTTTGTTGCGGGTAATTGCACAAAATCTTTCTCCAGAATCAACCCCCGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGATGGCAGTGTAGTTGCTGTGGTTGATGTGATTCATGTCACTCATGCTGCAGTGGCGACAGTAAGTCAGGTTGGGAATAATGAAGCTGCCACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAGTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCATTCCTTATCTTTCATCAAGCATTGCCAATACATTTTCCTTCAAAATACAAGATAAGAAGGGCAGAATGCACAGATTCACATGTGATACCCGGAGCATGATGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTTCTCGTTCAGGAAGTTATGCTTATTCAGATGCATGGGCTTCAGCATATAGTGCCGCCGCTGCTGGTGCTGCACTTGTTGCTGGCTTAGGCATATTAACGTACTTGAAGCGAGTTTGA | 1581 | 0.4409 | MASQSGASRRSISSSTRRASESGAPRKSISSSRPLALAGERTVKSLRLTKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDIAARVIAKEINLEETPVSKVMTRNPVFVLSETLAAEALQKMVQGKFRHLPVVENGEVLALLDIAKCLHDAIARMERAAEKGKAIAAAVEGVEKHWGTSDSNTSFIETLREQIFKPSLSTIIPENSKLVTVSPTDSVLTTTKKMVEFRASCAVVTVNDKPRGIFTSKDILLRVIAQNLSPESTPVEKVMTPNPECVIIDTPIVDALHTMHDGKFLHLPVVDRDGSVVAVVDVIHVTHAAVATVSQVGNNEAATTLMQRFWDSAMALTPNDDDDDTRSEGSLKVASEGGETGRSIPYLSSSIANTFSFKIQDKKGRMHRFTCDTRSMMEVITSILQRLGDDIDPNNIPQILYEDEDHDKVVLASDSDLAAAVDHARTAGLKGLKLHLDYAGPRDNVKGSRSGSYAYSDAWASAYSAAAAGAALVAGLGILTYLKRV | 526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma04g01908 | 526 | ProSiteProfiles | CBS domain profile. | 280 | 341 | IPR000644 | - | |
| Gma04g01908 | 526 | SMART | cbs_1 | 218 | 265 | IPR000644 | - | |
| Gma04g01908 | 526 | SMART | cbs_1 | 50 | 98 | IPR000644 | - | |
| Gma04g01908 | 526 | SMART | cbs_1 | 283 | 331 | IPR000644 | - | |
| Gma04g01908 | 526 | SMART | cbs_1 | 116 | 160 | IPR000644 | - | |
| Gma04g01908 | 526 | SUPERFAMILY | CBS-domain pair | 40 | 157 | IPR046342 | - | |
| Gma04g01908 | 526 | SUPERFAMILY | CBS-domain pair | 218 | 330 | IPR046342 | - | |
| Gma04g01908 | 526 | SMART | PB1_new | 395 | 480 | IPR000270 | GO:0005515 | |
| Gma04g01908 | 526 | Gene3D | - | 26 | 178 | IPR046342 | - | |
| Gma04g01908 | 526 | Gene3D | - | 189 | 342 | IPR046342 | - | |
| Gma04g01908 | 526 | Pfam | CBS domain | 276 | 326 | IPR000644 | - | |
| Gma04g01908 | 526 | Pfam | CBS domain | 48 | 95 | IPR000644 | - | |
| Gma04g01908 | 526 | Pfam | CBS domain | 109 | 153 | IPR000644 | - | |
| Gma04g01908 | 526 | Pfam | CBS domain | 216 | 262 | IPR000644 | - | |
| Gma04g01908 | 526 | Pfam | PB1 domain | 395 | 478 | IPR000270 | GO:0005515 | |
| Gma04g01908 | 526 | Gene3D | - | 394 | 477 | - | - | |
| Gma04g01908 | 526 | ProSiteProfiles | PB1 domain profile. | 393 | 480 | IPR000270 | GO:0005515 | |
| Gma04g01908 | 526 | CDD | CBS_pair_MUG70_1 | 48 | 164 | - | - | |
| Gma04g01908 | 526 | ProSiteProfiles | CBS domain profile. | 113 | 171 | IPR000644 | - | |
| Gma04g01908 | 526 | SUPERFAMILY | CAD & PB1 domains | 389 | 480 | - | - | |
| Gma04g01908 | 526 | PANTHER | CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN | 11 | 514 | - | - | |
| Gma04g01908 | 526 | ProSiteProfiles | CBS domain profile. | 212 | 272 | IPR000644 | - | |
| Gma04g01908 | 526 | MobiDBLite | consensus disorder prediction | 357 | 381 | - | - | |
| Gma04g01908 | 526 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Gma04g01908 | 526 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 11 | 514 | - | - | |
| Gma04g01908 | 526 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Gma04g01908 | 526 | CDD | PB1_MUG70 | 396 | 480 | - | - | |
| Gma04g01908 | 526 | ProSiteProfiles | CBS domain profile. | 47 | 106 | IPR000644 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma04g01908 | Gma-Chr4 | 49344508 | 49351522 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma04g01908 | - | - | gmx:100785816 | 890.182 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma04g01908 | 04 | 49344508 | 49351522 | Gma06g01503 | 06 | 14474127 | 14475957 | GST | |
| Gma04g01908 | 04 | 49344508 | 49351522 | Gma05g02003 | 05 | 41395529 | 41400948 | PCT | |
| Gma04g01908 | 04 | 49344508 | 49351522 | Gma08g00110 | 08 | 958741 | 964074 | PCT |