Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00677 ATGATTTATTGGCCGGACGGGTTAAAAATTATTCAAATTGTGCCCGTTGCTTTCTATGAGTCATGGTGCATGACTTATGAAAGGAAGAAGAAGGCTACAAGTAGTATGATGGAGTTCAAAGCAGCTTCGTTTTTCTCCTCTCTGTCTCTCAGGGTTAGGTTGTACTTGTATTATAGAATGAGTAGACCAACAACACGGAGTAAAAATAAAAGACAGAAACAAGGGGATGATGGCAATGGCACTAGTGAAATATGGAGGAAAATTCATAATACAGGGGTGGTATCCAAGGATGACATGAATCAATTGTATATGATTTGGAAGCCAGTTTGTTCAGGCTGCCGTGTCAATACCAAAGATAACCCAAATTGCTTCTGTGCATTGGTTCCACCTCCAAATGGAGCCCGGAAGTCTGGCTTATGGCAAAAGATGTCAGATGTTGTTGAGAGTCTTGGCCATGACCCAACCAAGGATCTTCGAGCTTCTGCTGATTCTCCTGCAGGTCTCACAAATCTGGGAGCAACATGCTATGCCAACTGTATACTCCAGTGCTTGTACATGAATAAATCTTTCCGAGAAGGCATGTTTTCTGTAGAACGAGATGTTTTACAACAACACCCTGTGCTGGATCAGCTGGCTCGACTTTTTGTGCAGTTGCATATTAGTAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTCTCTTTGCTTGAGCGTTGTCTGAGCCATTCCAAAGTGCCCAAGGCAACAACAATAGTTCAAGATCTTTTCCGAGGAAGTGTTTCTCATGTGACGACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAAGGATTGAAAAGTTTAGATGAGAGCCTAGATGAATATCTCACTGCTGAAGAGCTTAATGGGGACAATCAATATTTTTGTGAGTCGTGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCCAAAGTACTTAATTTTCAGCTTAAACGTTATGTCTTCCTTCCTAAGACTACAACAAAGAAGAAAGTTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTCAACTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCTCACATCAAGGATGTAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTTTCATCCATTTGGTGAAGAGTCTTCAAGTTCTACTACTAAATCCATCAAGACTGATGCAATTCATTCTGATAATTCTGAAGCAATGGTAGCTGACAGTAATGGAAATGGTTTAAATGCTACTCATTCACTATCTTCACAAGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACAAACAAAAAATGTTGGTGAAAGTGGGGGTGTAATTTGTGGTGCTAACCATAAAGAAAGCGAGGGTGTTGTAGTTGCTGTGCAAAATGGTGTTCCTCTTCCATCTCATATTTATGATGAGATTCAAAGTTTCAATGCCTCATATGATGATGCTTGTCAGCGGTACAATAATAGGAAAGAGTTAGAATTGAGTCTTATTAGTGAGAGAAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCATTGGAGCAGCCATTTTATTGGATTTCTAGTGAATGGCTTCGTCAATGGGCAGACAACATTATTCCAATTCCTCTTGACAACACGCCGGTCCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATGAAGCGGTTGTCTGCTAAAGCATGGGATACATTGTTCTCCAAGTATGGTGGAGGACCAGCATTGTCTCATGATAACCACTGTCGGGATTGCCTGATTCATGGGGCTATGACAGTGGTGTCAGCTGACACCTATCGGGATAGAAGAGAATCAATGAAGTCACTTGCACGGGATATTCTAGATGGAAACTGCCTAGATGGAAAGTATTACATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCACATGGTCAATTGATGCCAGAGCAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGATCTTTTGGCTCTTCTTATATGAAGATGCTGTTTCTGTAAAGCCTGATGATCCTTTGGGTGGCCCAACTTTTTCTTCAGATTCTGATGAGTGTTCCCAATGCAGTAATGAATTATCTGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAAACAACGTCAGAATCATGAGAAATTATTCCAGGCTAAAAGTTTGCAACTTTCTCTGCACAGCAAGTATTTCTTGGTGCCTTTGTCATGGATTTCAAAATGGAGAAATTACATTAGTCCAACCCTGAAGAATTCAGATAAACCTGAAACCTTAGATGGGGTAATTGACTCACTGTTGTGTGAAAAGCACTCACGGCTAATTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCTATAATCCAGAGGGAATCTTCTGCAGGTGGCTTAACCATTGTATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGCGGTATTGAGACCAAAGGAATATCAGCAACAATTGATCATGTTAATGATTCAGAGAATGTATTGACTGGATCCAGTGAAGAGATGCAAGTATGCAAGGATCAGTTGAGCACAGCAGATAAAATGAATTTTGAAAATGGGACTGGACAAAATTTAATTAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATCGGAGAAAGGGAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGGAGGTACCCAGATCAATATTGGAGGCTTCAAAGGGATTCGTTGAAACAGATCGGCGAGTTTCAAAACGTTCCCGCAAGTCTAAAAATGGGAATTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGGTGATAGGATAATTGTTGGGGATGATGAATGTGCTACCCTCGCAGATGTGAACATATTTGCTGGAGATCAGATTATAGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTTTGTGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCCGGGGAACACTTCTCACAGCAAATGTTTCATCCCAGTTGCAGGGGTATTGA 3435 0.4102 MIYWPDGLKIIQIVPVAFYESWCMTYERKKKATSSMMEFKAASFFSSLSLRVRLYLYYRMSRPTTRSKNKRQKQGDDGNGTSEIWRKIHNTGVVSKDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALVPPPNGARKSGLWQKMSDVVESLGHDPTKDLRASADSPAGLTNLGATCYANCILQCLYMNKSFREGMFSVERDVLQQHPVLDQLARLFVQLHISKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKATTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTAEELNGDNQYFCESCKTRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKVTSAFSFPAELDMRHRMSELSQFNLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGFHPFGEESSSSTTKSIKTDAIHSDNSEAMVADSNGNGLNATHSLSSQVETFLSSDAYMLMYHLKQTKNVGESGGVICGANHKESEGVVVAVQNGVPLPSHIYDEIQSFNASYDDACQRYNNRKELELSLISERRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADNIIPIPLDNTPVQCSHGKVPVSKVTSMKRLSAKAWDTLFSKYGGGPALSHDNHCRDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHGQLMPEQAPGAKRVLIPEIFWLFLYEDAVSVKPDDPLGGPTFSSDSDECSQCSNELSEVACLEDSLRLVKQKQRQNHEKLFQAKSLQLSLHSKYFLVPLSWISKWRNYISPTLKNSDKPETLDGVIDSLLCEKHSRLIERPPELVFRRGAIIQRESSAGGLTIVSENDWKCFCEEWGGIETKGISATIDHVNDSENVLTGSSEEMQVCKDQLSTADKMNFENGTGQNLIKTCPEVCESCIGERESCELMQKLNYCNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKSKNGNSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIVGDDECATLADVNIFAGDQIIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTANVSSQLQGY 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00677 1144 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 61 1112 - -
Gma04g00677 1144 SMART dusp 591 662 IPR006615 GO:0004843
Gma04g00677 1144 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 167 182 IPR018200 GO:0004843|GO:0006511
Gma04g00677 1144 Gene3D - 1031 1102 - -
Gma04g00677 1144 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 61 1112 - -
Gma04g00677 1144 CDD Peptidase_C19L 167 506 IPR033841 GO:0004843
Gma04g00677 1144 SUPERFAMILY Cysteine proteinases 165 509 IPR038765 -
Gma04g00677 1144 ProSiteProfiles DUSP domain profile. 808 928 IPR006615 GO:0004843
Gma04g00677 1144 SUPERFAMILY DUSP-like 577 665 IPR035927 -
Gma04g00677 1144 Gene3D Cysteine proteinases 148 509 - -
Gma04g00677 1144 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 166 509 IPR028889 -
Gma04g00677 1144 ProSiteProfiles DUSP domain profile. 680 787 IPR006615 GO:0004843
Gma04g00677 1144 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 403 421 IPR018200 GO:0004843|GO:0006511
Gma04g00677 1144 CDD Ubl_USP48 1032 1133 IPR044743 GO:0004197|GO:0004843|GO:0016579
Gma04g00677 1144 ProSiteProfiles DUSP domain profile. 573 665 IPR006615 GO:0004843
Gma04g00677 1144 SUPERFAMILY Ubiquitin-like 1034 1102 IPR029071 -
Gma04g00677 1144 Pfam Ubiquitin carboxyl-terminal hydrolase 167 506 IPR001394 GO:0004843|GO:0016579
Gma04g00677 1144 Gene3D - 804 924 IPR035927 -
Gma04g00677 1144 Gene3D - 565 666 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00677 Gma-Chr4 6276503 6291421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00677 164 444 Miscellaneous Gene Families AT4G31670 29.568 6.70e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00677 - K11858 gmx:100782778 2170.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00677 04 6276503 6291421 Gma04g00677 04 6276503 6291421 ECH
Gma04g00677 04 6276503 6291421 Gma06g00671 06 6092899 6103663 GST
Gma14g01192 14 19036402 19045426 Gma04g00677 04 6276503 6291421 PCT
Gma04g00677 04 6276503 6291421 Gma14g01192 14 19036402 19045426 PCT