Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01989 ATGAGGACCTTTTCCCTCTTTTCTTGTCTTTTTTTCTTTCTTTCTGTCTTTTCCACCACTCTGTTCCACCCTGGTCATTCCCTCCACCACCACCCTCACTCTGCCACACACAACTACAGAGATGCTCTCACCAAATCCATCATCTTCTTTGAGGGCCAGCGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGAGACTCTGGTCTCTCTGATGGCTCAGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCGTGGAGTGTTATTGAGTTTGGTGGGGTCATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGCGACAGATTATCTTCTCAAAGCTACTGCACATCCAGACATCATTTATGTTCAGGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCTGATGTGGCTGCAGAAACTGCTGCTGCTCTTGCAGCTGCTTCTCTGGTTTTTAAAAAAGTTGATCCCACCTACTCCAAAACATTGGTTAGGAGAGCTATCCGTGTTTTCCAGTTTGCCGATAAATATAGGGGACCCTACAGCAATGGCTTGAAGCCCGTTGTGTGCCCCTTCTATTGTTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTACTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAGGTTAATGGACAGACCCTTGGGGCACCAGATTCTGACAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCTAAGGAATTTCTTGTTCGGAAGGTGCAAACACTACATGACTACAAGGGTCACGCGGACAATTTTATCTGTTCTGTTATCCCTGGCTCCTCTTCTTCCCAATTCACCCCAGGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCACCTCATTCATACTCTTAGCTTATGCTAAATACTTGACCAAAGCCCATGTGGTTGTGAACTGTGGTGGAACCATAGTAACTCCAAAGAGACTCCGAGCTATAGCCCAAAAACAGGTGGATTACTTGCTGGGAGACAACCCCTTGAAGATGTCTTATATGGTGGGGTATGGTCCACGGTACCCGCAAAGGATACACCACAGGGGCTCATCGCTGCCGTCCGTTGCTGTTCACCCTGGCAAGATCCAATGCTCAGCAGGATTCAGTGTGATGAACTCGCAATCACCCAACCCAAACATTCTAATGGGTGCAGTTGTTGGAGGGCCGGATCTGCACGATGGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAACCAGCTACTTATATTAACGCACCACTTGTAGGAGCACTTGCTTATCTCGCACACTCCTTTGGGCAACTCTAG 1503 0.4757 MRTFSLFSCLFFFLSVFSTTLFHPGHSLHHHPHSATHNYRDALTKSIIFFEGQRSGKLPSNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWATDYLLKATAHPDIIYVQVGDAVKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLVFKKVDPTYSKTLVRRAIRVFQFADKYRGPYSNGLKPVVCPFYCSYSGYQDELLWGATWLHKATKNPMYLNYIKVNGQTLGAPDSDNTFGWDNKHVGARILLSKEFLVRKVQTLHDYKGHADNFICSVIPGSSSSQFTPGGLLFKMGDSNMQYVTSTSFILLAYAKYLTKAHVVVNCGGTIVTPKRLRAIAQKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSVAVHPGKIQCSAGFSVMNSQSPNPNILMGAVVGGPDLHDGFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01989 500 SUPERFAMILY Six-hairpin glycosidases 36 498 IPR008928 GO:0005975
Gma03g01989 500 PANTHER ENDO-1,4-BETA-GLUCANASE 5 500 - -
Gma03g01989 500 Gene3D - 35 496 IPR012341 GO:0005975
Gma03g01989 500 Pfam Glycosyl hydrolase family 9 39 490 IPR001701 GO:0004553|GO:0005975
Gma03g01989 500 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Gma03g01989 500 PANTHER ENDOGLUCANASE 17 5 500 - -
Gma03g01989 500 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 393 419 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01989 Gma-Chr3 45543491 45545952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01989 2 496 Glycoside Hydrolase AT1G02800 76.162 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01989 K01179 - gmx:100793900 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01989 03 45543491 45545952 Gma03g01989 03 45543491 45545952 ECH
Gma03g01989 03 45543491 45545952 Gma10g00163 10 1514101 1520891 PCT
Gma03g01989 03 45543491 45545952 Gma02g00158 02 1504080 1506606 PCT
Gma10g00163 10 1514101 1520891 Gma03g01989 03 45543491 45545952 PCT
Gma02g00158 02 1504080 1506606 Gma03g01989 03 45543491 45545952 PCT