Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00158 ATGACTTTCTCCCTTTCATTCACCACTCTGCTTTCCCTTCTCTCTGTCATTCTGCTTCATGTCAATGCCTTCCCCGTTCATTTCAATCACCCCATACACCATCGCCACCCTCGCTTTGCCGCTCATAACTACAGAGACGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGAGACTCTGGCCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTGAAATTTGGTTTTCCCATGGCATTCACCACCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGCCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGGTGGGGGATGCTAAGAAGGACCATGCTTGTTGGGAGAGACCAGAGGACATGGATACTCCAAGAAGCGTGTTTAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCAGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTTAGAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCGGACAATTTCGTCTGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAGGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATATGCTTGTTAACTGTGGCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTACCGTCGATTGCTGTACACCCGGGAAAGATCCAGTGTTCCGCAGGGTTCAGTGTGATGAATTCGCAATCCCCCAACCCAAACATTCTCGTGGGGGCCATTGTTGGTGGACCAGATCGGCATGATAGGTTCCCAGATCAACGGTCAGATTATGAGCAATCGGAGCCAGCTACATACATTAACTCACCCCTTGTAGGAGCACTGGCCTATCTTGCACACTCATTTGGTCAACTCTAG 1524 0.4836 MTFSLSFTTLLSLLSVILLHVNAFPVHFNHPIHHRHPRFAAHNYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWGTDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANTPGSEVAAETAAALAAASLVFRRSDPTYSKILVRRAIRVFQFADKYRGSYSNALKPYVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLISGTSLSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTQSHMLVNCGGITVTPRRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDRHDRFPDQRSDYEQSEPATYINSPLVGALAYLAHSFGQL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00158 507 PANTHER ENDOGLUCANASE 17 14 507 - -
Gma02g00158 507 SUPERFAMILY Six-hairpin glycosidases 41 505 IPR008928 GO:0005975
Gma02g00158 507 Gene3D - 40 507 IPR012341 GO:0005975
Gma02g00158 507 Pfam Glycosyl hydrolase family 9 44 497 IPR001701 GO:0004553|GO:0005975
Gma02g00158 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 473 491 IPR033126 -
Gma02g00158 507 PANTHER ENDO-1,4-BETA-GLUCANASE 14 507 - -
Gma02g00158 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00158 Gma-Chr2 1504080 1506606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00158 1 503 Glycoside Hydrolase AT1G02800 75.397 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00158 K01179 - gmx:100777718 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00158 02 1504080 1506606 Gma02g00158 02 1504080 1506606 ECH
Gma10g00163 10 1514101 1520891 Gma02g00158 02 1504080 1506606 GST
Gma03g01989 03 45543491 45545952 Gma02g00158 02 1504080 1506606 PCT
Gma02g00158 02 1504080 1506606 Gma03g01989 03 45543491 45545952 PCT