Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01390 ATGGGTAAGATTCTCCAAGAAACCGCGAAGCCGTCGGCGAATTCCACATCGGCGTACCCCTCTGCGGCGCCCGGCACCACGTCGTCGATGTCGGTGACGGAGACGGTGAGGGGGTCGCACCAGTTCAAGATTACGGGGTACTCGCTCTCGAAGGGGATCGGGATTGGGAAGTACATGGCCTCCGACGTGTTTTCCGTCGGAGGGTACAATTGGGCGATTTATTTCTACCCTGATGGGAAGAGCGTGGAGGACAATGCGACCTACGTGTCGCTCTTCATCGCGCTGGCCAGCGAAGGCACCGACGTTAGGGCACTTTTCGAGTTGACCCTTCTGGATCAGAGTGGGAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACTCTTGAGAGCGGGCCTTACACCTTGAAGTACCGTGGTAGTATGTGGGGTTACAAGCGGTTTTTCAAGAGAACAGCTCTAGAGACATCAGACTACCTTAAAGATGATTGTCTGTCTGTGAATTGTAGTGTTGGTGTTGTGAGGTCACGCACGGAAGGTCCGAAAATCTATACCATAGCAATACCGCCTTCTAGCATTGGTCAGAAATTTGGACATCTGCTGGAAAGTGGTAAAGGCAGTGATGTAAATTTTGAAGTTAATGATGATATTTTTGCTGCACATAAATTGGTACTAGCAGCTCGTTCACCTGTTTTCAGAGCACAGCTTTTTGGTCCTATGAAAGATCAGAATACCCAGTGTATTAAAGTTGAAGACATGGAAGCTCCAGTTTTCAAGgcattgcttcattttatatactgggactcgctaccagacatgcaagagcttactgggttggactcaaaatgggcatcaaccttaatggctcagcatcttctagcagcagctgatcgtcatggcttagagaggcttaggctgatgtgtgaagcgagtctctgtgaagatgttgctattaatactgtggctacaactctagccttggcagagcagcaccattgtttccagcttaaaGCTGTCTGTCTCAAGTTTATTGCTACCTCTCAAAATCTTAGAGCTGTGATGCAAACTGACGGATTTGAGTACTTGAAGGAAAGCTGCCCATCTGTTCTGACTGAGCTATTGGAGTACGTTGCCAGATTTACTGAGCATTCAGACATCATGTGCAATCATAGGAATGATGCCCTACTTGATGGCAGTGATATAAATGGGAGGCGGGTGAAGCAAAGGCTCTAG 1233 0.3942 MGKILQETAKPSANSTSAYPSAAPGTTSSMSVTETVRGSHQFKITGYSLSKGIGIGKYMASDVFSVGGYNWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYTIAIPPSSIGQKFGHLLESGKGSDVNFEVNDDIFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLDSKWASTLMAQHLLAAADRHGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSQNLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDIMCNHRNDALLDGSDINGRRVKQRL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01390 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 19 389 - -
Gma03g01390 410 Gene3D - 316 391 - -
Gma03g01390 410 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Gma03g01390 410 CDD BTB_POZ_BPM_plant 193 313 - -
Gma03g01390 410 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Gma03g01390 410 CDD MATH 38 171 IPR002083 GO:0005515
Gma03g01390 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 389 IPR045005 GO:0016567
Gma03g01390 410 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
Gma03g01390 410 MobiDBLite consensus disorder prediction 7 26 - -
Gma03g01390 410 SUPERFAMILY TRAF domain-like 34 173 - -
Gma03g01390 410 SMART BTB_4 207 316 IPR000210 GO:0005515
Gma03g01390 410 MobiDBLite consensus disorder prediction 8 26 - -
Gma03g01390 410 CDD BACK_AtBPM-like 313 376 IPR034090 -
Gma03g01390 410 SUPERFAMILY POZ domain 184 314 IPR011333 -
Gma03g01390 410 Pfam MATH domain 57 171 IPR002083 GO:0005515
Gma03g01390 410 SMART math_3 42 154 IPR002083 GO:0005515
Gma03g01390 410 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Gma03g01390 410 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01390 Gma-Chr3 40009545 40013723 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01390 K10523 - gmx:100792660 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01390 03 40009545 40013723 Gma03g01390 03 40009545 40013723 ECH
Gma19g01454 19 43741745 43746579 Gma03g01390 03 40009545 40013723 GST
Gma03g01390 03 40009545 40013723 Gma10g00234 10 2172253 2176660 PCT
Gma03g01390 03 40009545 40013723 Gma02g01362 02 15751266 15762361 PCT
Gma10g00234 10 2172253 2176660 Gma03g01390 03 40009545 40013723 PCT
Gma02g01362 02 15751266 15762361 Gma03g01390 03 40009545 40013723 PCT