Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00022 atgGCCTTGGTGCCACTCCTCCAATGGGATTATGTTCATGGGAAGGGTCTTAAGCTTGGCATTTATTCAGCTGCAGGGTATTTTACTTGTGCAAATGTGATGCCTGGTTCACTTGGTTATGGAGAGCAAGATGCCAAGACTTTCGCATCATGGTTTATGCTGATTATGCAAGACCTGGTGGTTGGAATGGCCCCTCTTATTATCGGGTGTGATGTTAGAAATATGACTGAAGACACTAAAGAGATACTATCAAATACGGAGGTTATTGCAGTTAACCAAGATCCACTTGGTAAACAAGGTAAAAAGGTTAGGATGGAAAGCACTCTCGAGGTTTGGGCAGGTCCTCTTTCAGAATATAGGGTGGATGTTGTTTTACTCAATAAATACTCTGATCTTCGTGCGTCCATTACTGCTCTATGGGAAGATATTGGCCTTCATCCTTCAACTGTTGTTGAATCAAGAGATCTTTGGGAGCATAACACATTGGAAAGACAATTCAGTGGTAAATTGACTGACACTGTTGAACCACATTCTTGCAAAATGTATGTGTTGAAGCCAATAGCTTGA 567 0.4145 MALVPLLQWDYVHGKGLKLGIYSAAGYFTCANVMPGSLGYGEQDAKTFASWFMLIMQDLVVGMAPLIIGCDVRNMTEDTKEILSNTEVIAVNQDPLGKQGKKVRMESTLEVWAGPLSEYRVDVVLLNKYSDLRASITALWEDIGLHPSTVVESRDLWEHNTLERQFSGKLTDTVEPHSCKMYVLKPIA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00022 188 Pfam Alpha galactosidase C-terminal beta sandwich domain 107 184 IPR041233 -
Gma03g00022 188 PRINTS Glycosyl hydrolase family 27 signature 44 61 IPR002241 GO:0004553|GO:0005975
Gma03g00022 188 PRINTS Glycosyl hydrolase family 27 signature 9 30 IPR002241 GO:0004553|GO:0005975
Gma03g00022 188 Gene3D - 98 187 IPR013780 -
Gma03g00022 188 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 10 51 IPR002241 GO:0004553|GO:0005975
Gma03g00022 188 Pfam Alpha galactosidase A 10 53 IPR002241 GO:0004553|GO:0005975
Gma03g00022 188 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 63 186 IPR002241 GO:0004553|GO:0005975
Gma03g00022 188 SUPERFAMILY Glycosyl hydrolase domain 96 187 - -
Gma03g00022 188 SUPERFAMILY (Trans)glycosidases 59 95 IPR017853 -
Gma03g00022 188 Gene3D Aldolase class I 57 97 IPR013785 -
Gma03g00022 188 PANTHER ALPHA-GALACTOSIDASE 1 63 186 - -
Gma03g00022 188 PANTHER ALPHA-GALACTOSIDASE 1 10 51 - -
Gma03g00022 188 Gene3D Aldolase class I 7 56 IPR013785 -
Gma03g00022 188 SUPERFAMILY (Trans)glycosidases 10 51 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00022 Gma-Chr3 296545 299429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00022 10 51 Glycoside Hydrolase AT5G08370 78.571 2.76e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00022 K07407 - gmx:100806804 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01998 18 53272926 53276710 Gma03g00022 03 296545 299429 PCT
Gma09g02497 09 50291258 50294801 Gma03g00022 03 296545 299429 PCT