Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01397 ATGTCTACGCCATGCAATAATTCAGCTAGGTTTGTAAATTACAGGCCAATATCTGATGTCTCTAGTGATCTCACCATCGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGGATTCGGAAAATGTTGTTAGAAACAAAAGATTCAAAAGTTTCACGCATAAGTCTCCCAAACTTGCCAGGTGGTGCAGAGGCATTTGAGCTGGCTGCCAAATTCTGTTATGGAATCAATGTGGAGTTCAGTCTCTCCAATGTTGCCATGCTAAAATGTGTAGCTCATTTTCTAAAAATGACAGAAGAGTTTGCAGACAAAAACTTGGAGACGCGAGCCGAAGCATATCTAAAGGAGACAGTGCTCCCAAATATATCAAACACAATATCTGTTCTTCACCGTTGTGAATCTCTTGTTCCCATTTCAGAAGAGATTAGCCTTGTCAGCAGACTAATCAATGCAATTGCAAACAATGCATGCAAAGAACAGCTCACCACTGGTTTGCAAAAACTGGACCACAGCTTCCCTTCTAAAACCACCTCAAACATGGAACCTGAAACACCCTCAGAATGGTGGGGGAAATCTCTCAATGTTCTTAGTCTTGATTTCTTTCAAAGAGTTTTGTCTGCAGTGAAGTCAAAGGGATTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCACATAATTCCCTTCAAGGGATTGTTAGGGACCACCAAGCAGTGAAAGGATGTTTTCCCGACTTGGAATTACAAAAGAAACAAAGAGTCATTGTTGAAGCCATTGCTGGCTTACTACCAACTCAATCAAGGAAAAGCCTGGTTCCTATGGCATTTCTCTCAAGTTTGTTGAAAGCTGCAATATCTGCATCAGCATCCACTTCATGCAGATCTGATTTGGAGAGAAGGATTGGTCTACAACTTGACCAGGCTATTCTTGAAGACATCCTAATCCCAACAAATTCACATCAAAACACACATGGGACTATTTATGACACGGATTCAATTTTGAGGATTTTTTCCAATTTTCTGAACTTGGATGAGGAGGATGAAGATGATAATAGTCACCTGAGAGATGAAAGTGAAATGGTTTATGACTTTGACAGCCCCGGATCTCCAAAACAAAGCTCAATTCTGAAGGTATCCAAATTAATGGACAACTATCTAGCTGAAGTAGCACTAGACCCAAACTTGTTGCCATCAAAGTTCATATCCCTTGCTGAACTACTTCCAGATCATGCACGTATTGTGAGTGATGGACTCTATAGAGCCATTGATATATTCCTTAAGGTTCATCCAAACATAAAGGACTCAGAACGGTACCGGCTATGCAAAACCATTGATTGCCAGAAAATGTCTCAAGAGGCATGCAGCCATGCAGCACAAAATGAAAGGTTACCAGTGCAGATGGCAGTTCAGGTTCTATACTTTGAGCAAATAAGGCTCCGCAATGCCATGAGTGGAGGGCACAGCCATGTCTTCTTTGGAGGAGGAGCAGGACTTAATGGTCAATTCCCTCAACGCTCAGGGAGTGGTGCAGGAAGTGGAGCCATTTCCCCTAGAGACAACTATGCATCAGTGAGAAGGGAGAACCGTGAGCTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGATCATGTTAACATGAAGCAGGAGCTAGTAAAGTCCCACCCTGCCAACAAGCTATTCAAATCATTCACCAAAAAACTAAGCAAGCTCAATGCTATGTTTCGGATTAACAGTATCAAGCCAAATGGTTCTGAGAGTCGCTTTCCTTTTCCTAAGAGAAGGCGTCACTCAGTTTCATGA 1845 0.4184 MSTPCNNSARFVNYRPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKMLLETKDSKVSRISLPNLPGGAEAFELAAKFCYGINVEFSLSNVAMLKCVAHFLKMTEEFADKNLETRAEAYLKETVLPNISNTISVLHRCESLVPISEEISLVSRLINAIANNACKEQLTTGLQKLDHSFPSKTTSNMEPETPSEWWGKSLNVLSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGIVRDHQAVKGCFPDLELQKKQRVIVEAIAGLLPTQSRKSLVPMAFLSSLLKAAISASASTSCRSDLERRIGLQLDQAILEDILIPTNSHQNTHGTIYDTDSILRIFSNFLNLDEEDEDDNSHLRDESEMVYDFDSPGSPKQSSILKVSKLMDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAIDIFLKVHPNIKDSERYRLCKTIDCQKMSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHSHVFFGGGAGLNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVKSHPANKLFKSFTKKLSKLNAMFRINSIKPNGSESRFPFPKRRRHSVS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01397 614 Pfam BTB/POZ domain 21 106 IPR000210 GO:0005515
Gma02g01397 614 ProSiteProfiles BTB domain profile. 22 90 IPR000210 GO:0005515
Gma02g01397 614 Coils Coil 530 564 - -
Gma02g01397 614 SUPERFAMILY POZ domain 4 107 IPR011333 -
Gma02g01397 614 SMART BTB_4 22 126 IPR000210 GO:0005515
Gma02g01397 614 Gene3D Potassium Channel Kv1.1; Chain A 11 128 IPR011333 -
Gma02g01397 614 Pfam NPH3 family 195 463 IPR027356 -
Gma02g01397 614 ProSiteProfiles NPH3 domain profile. 195 487 IPR027356 -
Gma02g01397 614 PANTHER OS12G0117600 PROTEIN 12 607 IPR043454 -
Gma02g01397 614 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 12 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01397 Gma-Chr2 16147628 16150457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01397 6 437 EF-hand Containing Proteins AT2G47860 58.009 4.76e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01397 - - gmx:100814622 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01397 02 16147628 16150457 Gma02g01397 02 16147628 16150457 ECH
Gma10g00202 10 1828078 1832917 Gma02g01397 02 16147628 16150457 GST
Gma19g01977 19 48834662 48838700 Gma02g01397 02 16147628 16150457 PCT
Gma03g01936 03 45203250 45207452 Gma02g01397 02 16147628 16150457 PCT
Gma02g01397 02 16147628 16150457 Gma19g01977 19 48834662 48838700 PCT
Gma02g01397 02 16147628 16150457 Gma03g01936 03 45203250 45207452 PCT