Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02115 ATGATTGTGCTTAAGGTCCGTCGCACGAGCTTTAGTTTCAACGCGGCCACTGCCGCCGCAAAGGATCTGACCTCCTCACCTGCTTCGACTCCATCACATCGTCGCCCCCGCACAAGATCTTTGTTTTACATCGAATTGCAAGAAACCCAGACCCAGACAAATTCTCTAAGCAGATCGAATCAAAGCTCCGATATGACCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTATTTGAGCTCAAGAAGCAGATATCATGTTCTCTTATATTGTCAAATAAGACCGATAGCTATATAGCTTTCAAGGTGAAAACAACCAATCCCAAGAAGTATTGTGTTCGTCCAAACACCGGAGTAGTCATGCCACAATCTACatgtgatgttattgTTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACAAGTTTCTTCTTCAAAGCGTAAAAGTAGATGATGGAACCACCGCAAAGGATATCACAGCAGAAATGTTCAACAAGGAAGTAGGGCACGTGGTTGAGGAGTGCAAATTGAGAGTGGTGTATGTCTCTCCTACCCAACCCCCGTCTCCAGTCCCAGAAGGTTCCGAGGAAGGGTCATCACCTCGAGGTTCTGTTTCTGATAATGGAAATGCTAGTGGTGCTGATTCTGCAGCGGTAGCAAGAGCATTTGTTGAACGACATGAAGGTCCAGAAAAATCTGCAGAGGCAAAAGCTCTTATCTCAAGGCTAGCTGAAGAAAAGAATAATGCAATTCAACAAAATAACAAGCTTCGTCAGGAATTGGACCTACTGAGACGAGAAAGCAACAAAAGTCGTGGGGAAGTTTATCATAAACACGTTGGAATGGCAAGGAACTACTTCAAACAAGAACATGATCTTGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCAGACAGGATTCCGGTAATTGTGGAGAAGGCCGAAAGAAGTGACATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGACTTGACTGTAGGACAGTTTGTCTACGTGATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAATGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGATTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATCTGATTTCCATTCAGTAG 1239 0.4407 MIVLKVRRTSFSFNAATAAAKDLTSSPASTPSHRRPRTRSLFYIELQETQTQTNSLSRSNQSSDMTTGDLLSIEPLELKFLFELKKQISCSLILSNKTDSYIAFKVKTTNPKKYCVRPNTGVVMPQSTCDVIVTMQAQKDAPADMQCKDKFLLQSVKVDDGTTAKDITAEMFNKEVGHVVEECKLRVVYVSPTQPPSPVPEGSEEGSSPRGSVSDNGNASGADSAAVARAFVERHEGPEKSAEAKALISRLAEEKNNAIQQNNKLRQELDLLRRESNKSRGEVYHKHVGMARNYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISIQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02115 412 ProSiteProfiles Major sperm protein (MSP) domain profile. 70 190 IPR000535 -
Gma01g02115 412 Pfam MSP (Major sperm protein) domain 71 174 IPR000535 -
Gma01g02115 412 Coils Coil 241 282 - -
Gma01g02115 412 SUPERFAMILY PapD-like 61 205 IPR008962 -
Gma01g02115 412 MobiDBLite consensus disorder prediction 207 221 - -
Gma01g02115 412 CDD Ubl_ATG8 301 403 - -
Gma01g02115 412 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 65 281 IPR016763 GO:0005789
Gma01g02115 412 Pfam Autophagy protein Atg8 ubiquitin like 303 406 IPR004241 -
Gma01g02115 412 Gene3D Immunoglobulins 62 194 IPR013783 -
Gma01g02115 412 MobiDBLite consensus disorder prediction 191 224 - -
Gma01g02115 412 SUPERFAMILY Ubiquitin-like 294 406 IPR029071 -
Gma01g02115 412 Gene3D - 277 406 - -
Gma01g02115 412 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 65 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02115 Gma-Chr1 56485228 56496694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02115 - - gmx:100798247 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02115 01 56485228 56496694 Gma11g00293 11 2358925 2362415 GST
Gma01g02115 01 56485228 56496694 Gma17g01297 17 11645859 11649642 PCT
Gma01g02115 01 56485228 56496694 Gma05g00551 05 5440411 5447126 PCT