Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0648 ATGGCTCTGTTCTCATATCATCAACATTCTTCTGAAATGATCTTCACTTTCGTCCTTTTTCTTGTTTTCAAGGGGGTTTCAGGGGCTACATTTACATTTGTGAACAAGTGTGACTACACAGTATGGCCCGGGATTTTGGGAAAACCGGACCTTGGAAACACAGGCTTTGAGCTAAGCAAGGGAAGCTCTCGTAGCTTCCAGGCCCCATCAGGCTGGTCCGGTAGATTCTGGGCCAGAACCGACTGTAAATTCGACGATTCTGGCCACGGAACTTGCTCCACCGGCGACTGTGGCTCCGGAGGGGTCGACTGCAACGGAGCCGGAGCCACACCTCCGGCGACCCTCGCCGAGTTCACCCTTGGCTCTGGCTCCCAAGACTACTATGACGTAAGCCTCGTAGACGGCTACAATCTGCCAATGATGGTAGAAGCCAAGGGAGGGTCAGGCTCATGCGCGACCACGGGTTGTGTGGCCGATCTCAATCGCCGGTGCCCGTCCGAATTAAGGGTCGACGGCGGCGATGCCTGTAAGAGTGCTTGTGACGCGTTTGGAAAACCTGAGTATTGCTGCAACGGGGCATACGGTTCCCCTTCCACGTGCAAGCCCTCCGAGTACTCTGAGATGTTCAAGTCGGCGTGTCCAAAATCCTATAGCTACGCCTATGATGATTCCACCAGTACCTTTACTTGTTCAGGAGCTGACTATACAATCACATTTTGTCCTTCTTCTTCCCCAAGTCTGAAGTCGTCGTCCATAGGGTCGGACGCAGGATCATCAGTTGAACAGGCTGCACTTGCTACTTCTTCGTGGATAGCAAATTTGGCTACTGGGTCTTCCACCAGAATTCAGCCTCGTGGAGCTTCAAACTGTACACTTTTTGTGATAGTTACCCTCGTTCTTTCACTTTTAGGCTTAGTCCTCTGA 924 0.5195 MALFSYHQHSSEMIFTFVLFLVFKGVSGATFTFVNKCDYTVWPGILGKPDLGNTGFELSKGSSRSFQAPSGWSGRFWARTDCKFDDSGHGTCSTGDCGSGGVDCNGAGATPPATLAEFTLGSGSQDYYDVSLVDGYNLPMMVEAKGGSGSCATTGCVADLNRRCPSELRVDGGDACKSACDAFGKPEYCCNGAYGSPSTCKPSEYSEMFKSACPKSYSYAYDDSTSTFTCSGADYTITFCPSSSPSLKSSSIGSDAGSSVEQAALATSSWIANLATGSSTRIQPRGASNCTLFVIVTLVLSLLGLVL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0648 307 CDD TLP-PA 30 240 - -
Glsi09g0648 307 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Glsi09g0648 307 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Glsi09g0648 307 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Glsi09g0648 307 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Glsi09g0648 307 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Glsi09g0648 307 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Glsi09g0648 307 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Glsi09g0648 307 FunFam THAUMATIN-LIKE PROTEIN 1 29 241 - -
Glsi09g0648 307 SMART tha2 31 241 IPR001938 -
Glsi09g0648 307 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Glsi09g0648 307 PANTHER OS03G0233200 PROTEIN 16 241 IPR001938 -
Glsi09g0648 307 Gene3D Thaumatin 29 241 IPR037176 -
Glsi09g0648 307 Pfam Thaumatin family 35 241 IPR001938 -
Glsi09g0648 307 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0648 Glsi-ChrGlsi09 4495478 4496613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0648 13 279 Receptor kinase-like Gene Family AT5G38280 45.357 5.32e-78 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0648 09 4495478 4496613 Glsi09g0648 09 4495478 4496613 ECH
Glsi09g0648 09 4495478 4496613 Glsi08g2050 08 14379747 14381018 ECH
Glsi01g0096 01 817579 827111 Glsi09g0648 09 4495478 4496613 ECH