Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2050 ATGGATCATCAAACACTTTTGTTTTCGTTTCTATTAGCACTTCACCTATCAGTCTCAGGAGTAATTTCAACGACATTCTCAATAGTTAACAAATGCGACTACACAGTATGGCCAGGCATTCTTTCAAACGCTGGAGTTGCTCCTCTTTCAGCCACCGGTTTCGTTCTTCAAACGGGTCAGTCTAAGACCATCTCTGCACCTAAGTCTTGGGGTGGCCGCTTCTGGGGACGAACTCTATGCACACAAGATTCCACCGGCAAGTTTTCATGCGTCACTGGTGACTGTGGGTCGGGGAAGGTGGAATGCGCTGGCAAAGGAGCCACGCCACCGGCCACGTTGGCGGAGTTCACTTTAGACGGAGCTGGGGGGCTTGATTTCTTCGACGTCAGCTTGGTAGACGGGTTCAACGTGCCCATGTCGGTGGTCACTCGAGCCGGCTCCGGAGAGAACTGCAGGAGCACGGGTTGTGCGGTAGATCTGAACGGTGCGTGTCCTTCAGAGCTCAAGGTAAGGAGCGTGGATGGAAAAGAAGGGGTGGCGTGCAAGAGCGCTTGTGAGGCATTTGGATCGCCTAAGTACTGTTGCACTGGGACGTATGGATCTCCGGAGACCTGCAAGCCATCCGCTTACTCGGAGATATTCAAGAGCGCTTGCCCACGCGCCTACAGCTATGCGTACGACGATGAGACCAGCACATTTACATGTGCAAATGCTGATTATAGCATTACATTTTGTCCAGCCCCCAGGGAGAAAGCGTCGGAGGGGCCAGGGCGAAACACCGAATCCGACAGTACCCCTACTCCAGGCTCGCTCAACAGTAACACCACCACTGACACCACCACCATGATATACGAAGGTGCTTTTGATCAAACTGACATATCAAGCTCCACGTGTATACAATCCCAAGCTCTTGCCGGCATCATCAGTGTGGCCATGGCCTTTTGGCCAGCATGGACCCAGTGA 963 0.5286 MDHQTLLFSFLLALHLSVSGVISTTFSIVNKCDYTVWPGILSNAGVAPLSATGFVLQTGQSKTISAPKSWGGRFWGRTLCTQDSTGKFSCVTGDCGSGKVECAGKGATPPATLAEFTLDGAGGLDFFDVSLVDGFNVPMSVVTRAGSGENCRSTGCAVDLNGACPSELKVRSVDGKEGVACKSACEAFGSPKYCCTGTYGSPETCKPSAYSEIFKSACPRAYSYAYDDETSTFTCANADYSITFCPAPREKASEGPGRNTESDSTPTPGSLNSNTTTDTTTMIYEGAFDQTDISSSTCIQSQALAGIISVAMAFWPAWTQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2050 320 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Glsi08g2050 320 PIRSF PR5 1 288 IPR001938 -
Glsi08g2050 320 Gene3D Thaumatin 24 246 IPR037176 -
Glsi08g2050 320 PANTHER OS03G0233200 PROTEIN 11 246 IPR001938 -
Glsi08g2050 320 MobiDBLite consensus disorder prediction 258 277 - -
Glsi08g2050 320 CDD TLP-PA 25 245 - -
Glsi08g2050 320 SMART tha2 26 246 IPR001938 -
Glsi08g2050 320 MobiDBLite consensus disorder prediction 250 277 - -
Glsi08g2050 320 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Glsi08g2050 320 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Glsi08g2050 320 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Glsi08g2050 320 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Glsi08g2050 320 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Glsi08g2050 320 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Glsi08g2050 320 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Glsi08g2050 320 Pfam Thaumatin family 30 246 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2050 Glsi-ChrGlsi08 14379747 14381018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2050 5 246 Receptor kinase-like Gene Family AT5G38280 55.510 1.06e-94 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g2050 08 14379747 14381018 Glsi08g2050 08 14379747 14381018 ECH
Glsi09g0648 09 4495478 4496613 Glsi08g2050 08 14379747 14381018 ECH
Glsi01g0096 01 817579 827111 Glsi08g2050 08 14379747 14381018 ECH