Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0096 ATGTTAGGTGAGATTCGAAAGGCAAAGGATGCAGGGGAGTATTGGAGTGGTGGTTTATATAGAGGACACAAAGGGTTCTCGAAGGGTGGGAAAGACTGTGTGAAAGGGATTGTAGAGAGGGGTTTTGGGAAGAGAGTTAAATCCACTTTTTGGACAACTAAAAGCTCCCATGGTGCTTTGACGAAAATCTTCTGGTTTTCGAGCCCCTTTTTAACTCAAGGATTTGATTCCTTGCATGGTTTTGCATTTGCCAAAGTCTTATTCTTTGTTTTTACTTTATTGGAACCCAGAACACAGTTTCACTGGTCAGCGCCAAAAACACTGAAGAAAACTACAGGCAACAAGCAAAAGAAAAGCGACCAAAAAAAGACAGAAAAATGGAGAATCGATAAGCCACTCGCTTCACAAGAAAGTAAAGTTCTTTGGTTTTCTCTAAATCAAAATCCTTCTTCTGTTGTTGTTCATCAAATTCTTCTTCTTCTTCCTCTATGGGACGCCTTCTTCTCTTCCTCATTATCTTCACCTTCCTCTCAGGTAATTAATTTTCCAAACTTTCTAAATCATCCTCGTAAAATTCAATTAGCTCATCTTTTGGGAATTTGGGGTTCCTTTTTTGTCGTTGCAGAGGTGCAATCGGCGTCGTTCAAGATTGTGAACAAGTGTCGCCACACGATATGGCCGGGTTTGCTATCCGGGGCCACTTCGCCGCCTCTCCCTACAACCGGCTTCGCTCTCCAAACCGGAAAGTCAAAGACCGTCAACATACCCAAATCTTGGTCGGGTCGGCTATGGGCTCGGACCCTCTGTGGCCCAGATTCGGAGGGAAAATTCTCCTGCGTCACCGCCGACTGTGGTTCTGGTAAAGTACAGTGTGCCGGTGGTGGGGCCAAGCCGCCGGCCACATTGGCTGAGTTCACTCTCAACGGAGCCAACGGGTTAGATTTCTACGACGTGAGCTTGGTCGATGGGTACAACCTGCCGATGCTGATAGTGGCGAAGGGAGGGAAACGGGGTGGATGCAGCGCCACCGGATGTTTGGTGGACCTGAACGGCGGATGCCCGACGGATCTTAGGGTGGCGCCAGGGAACGGGACTGGGCGTGGTAACGTGGCTTGCAGAAGCGCGTGTGAGGCTTTTGGAGATCCGCAGTATTGTTGCAGTGAGGCGTACTCTACGCCCGACGTGTGTCATCCATCAGTATATTCGCAATTCTTCAAGCATGCTTGCCCGCGCGCGTATAGTTACGCGTACGATGACAAGACTAGCACCTACACGTGTGCCTCGGCCGATTACTTGATCATATTCTGCCCCTTACCCTATACAAGCCAGAAAGTGCTGGGAGCAAAGAAGGACGGGGCACCACTTCCTCTGGTAAACAAGACAATGATGTACTTATCAAGACAACATTCAGGCGCTTCTTCTTCTTCATCATCAACAGCTCTGATCTTAATGCAGATTATGGCTCATGTTACCTCTGCTGCGGCATTTTTCCTCTTCTGCCCTCTTTCTCTGTTACATCCTCTATGA 1527 0.482 MLGEIRKAKDAGEYWSGGLYRGHKGFSKGGKDCVKGIVERGFGKRVKSTFWTTKSSHGALTKIFWFSSPFLTQGFDSLHGFAFAKVLFFVFTLLEPRTQFHWSAPKTLKKTTGNKQKKSDQKKTEKWRIDKPLASQESKVLWFSLNQNPSSVVVHQILLLLPLWDAFFSSSLSSPSSQVINFPNFLNHPRKIQLAHLLGIWGSFFVVAEVQSASFKIVNKCRHTIWPGLLSGATSPPLPTTGFALQTGKSKTVNIPKSWSGRLWARTLCGPDSEGKFSCVTADCGSGKVQCAGGGAKPPATLAEFTLNGANGLDFYDVSLVDGYNLPMLIVAKGGKRGGCSATGCLVDLNGGCPTDLRVAPGNGTGRGNVACRSACEAFGDPQYCCSEAYSTPDVCHPSVYSQFFKHACPRAYSYAYDDKTSTYTCASADYLIIFCPLPYTSQKVLGAKKDGAPLPLVNKTMMYLSRQHSGASSSSSSTALILMQIMAHVTSAAAFFLFCPLSLLHPL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0096 508 MobiDBLite consensus disorder prediction 105 126 - -
Glsi01g0096 508 ProSiteProfiles Thaumatin family profile. 212 437 IPR001938 -
Glsi01g0096 508 SUPERFAMILY Osmotin, thaumatin-like protein 214 437 IPR037176 -
Glsi01g0096 508 PRINTS Pathogenesis-related protein signature 214 226 IPR001938 -
Glsi01g0096 508 PRINTS Pathogenesis-related protein signature 427 436 IPR001938 -
Glsi01g0096 508 PRINTS Pathogenesis-related protein signature 314 330 IPR001938 -
Glsi01g0096 508 PRINTS Pathogenesis-related protein signature 262 273 IPR001938 -
Glsi01g0096 508 FunFam THAUMATIN-LIKE PROTEIN 1 213 437 - -
Glsi01g0096 508 Gene3D Thaumatin 213 437 IPR037176 -
Glsi01g0096 508 SMART tha2 215 437 IPR001938 -
Glsi01g0096 508 ProSitePatterns Thaumatin family signature. 275 291 IPR017949 -
Glsi01g0096 508 PANTHER OS03G0233200 PROTEIN 208 437 IPR001938 -
Glsi01g0096 508 Pfam Thaumatin family 219 437 IPR001938 -
Glsi01g0096 508 CDD TLP-PA 214 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0096 Glsi-ChrGlsi01 817579 827111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0096 197 437 Receptor kinase-like Gene Family AT5G38280 49.383 1.37e-81 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0096 01 817579 827111 Glsi01g0096 01 817579 827111 ECH
Glsi01g0096 01 817579 827111 Glsi09g0648 09 4495478 4496613 ECH
Glsi01g0096 01 817579 827111 Glsi08g2050 08 14379747 14381018 ECH