Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1867 ATGTTTCCAGGGGTGACGGGAATGCTCAACAGAGGGCACAAGATAAAAGGGTCAGTGGTGTTGATGCGCAAGAACGTGTTGGACTTCAACTCCATAGCTGATGTTGGTGCTGGAGACCTCAGAGGTGTCATTGGAACCGGCATCAACGTCATTGGCTCTGCTGTTGATGGCCTCACCGCCTTCTTGGGCCGCAGCGTCTCCCTCCAGCTCATCAGTGCTACTCACTCTGATGCAAATGGACAAGGGAAAGTTGGAAAGGATACCTTTTTGGAAGGCATTATTGCCTCGTTACCAACCTTGGGAGCTGGCGAGTCAGCATTCAGCATTCATTTTGAGTGGGACGACAGCATGGGAATTCCTGGTGCATTCTACATAAAGAACTACATGCAAGTTGAGTTTTATCTCAAGACTTTGACCCTTGAAGACGTTCCAAACCAAGGAACCATCCATTTTGTCTGCAACTCGTGGGTTTACAACTCTAAACTTTACAAAAGCCCTCGCATTTTCTTTGCCAACAAGCCATATCTTCCGAGTGAAACACCAGATCCACTTGTGAAGTACAGAGAAGAAGAGTTGAATAATTTAAGAGGTGATGGAACAGGAGAGCGTAAGGAATATGACAGAATCTATGATTATGATGTCTACAATGATTTGGGCAATCCAGATTGGGGTGAAAACTATGTTCGCCCCATTCTTGGAGGTTCTAGCACCAACCCTTACCCTCGGAGGGGAAGAACTGGCAGATCTAAAACAACGAATGATCCCAATAGTGAGAAACCAGGAGAAGTTTATGTTCCAAGAGACGAAAATTTTGGTCACTTGAAATCTTCGGACTTTCTTACCTATGCAATAAAATCTGTAACTCGATATGTCCTACCAGCTTTTGAATCTGTGTTCGATTTGAATTTAACACCAACTGAGTTTGATAGCTTCCAAGATGTGCGTGACCTCTATGATGGTGGAATTAGGCTACCTCTAGATGTAATTAGCGCCATTAGCCTCTTACCAGTCATCAAAGAACTCTTCCGTACCGATGGTGAAGGTTTGCTCAAGTTTCCGCCACCTCATGTCGTTCAAGCGAGTCATTCAGCATGGATGGCTGACGAAGAATTTGCAAGAGAAATGATTGCTGGTGTGAATCCTTGCATGATTCGCAGTCTTCAAGAATTTCCCCCGAAAAGCAATCTGGATCCTACAATCTATGGTGATCAAACCAGCAAAATAACAGCTGAAGTCCTTGATCTAGATGGGTGCTCACTCGACGAAGCACTCGCTGGTCGGAGACTATTTATGTTAGATTACCATGATGTATTCATGCCATATTTGAGGCGAATAAATCAGACTCAAGCGAAGGCTTATGCCACCAGGACTATCCTTTTTCTGAAAGACAATGGCGCTTTGAAGCCAGTGGCCATTGAATTAAGCTTGCCACATCCTGATGGAGATCAATCAGGTGCTGTCAGTCAAGTCATCTTGCCTGCAAAAGAAGGCGTTGAAAGTACAATTTGGCTACTAGCCAAAGCTTATGTCATCGTAAATGACTCATGCTACCATCAACTCATGAGCCATTGGTTGAATACTCATGCAGTTATTGAGCCATTTGTCATAGCAACAAATCGTCAGCTTAGTGTGCTTCACCCAATTTATAAACTCCTATCTCCTCACTATCGTGACACCATGAACATCAATGCACTTGCTCGGCAAAATCTAATTAATGCCAATGGCATAATAGAGAGAACTTTCTTGCCCTCAAAGTTTTCTGTGGAAATGTCTTCAGCGGTTTATAAGAATTGGGTTTTTACTGATCAAGCATTACCTGCTGATCTCATCAAGAGAGGAGTGGCAGTTGAGGATTCATCTTCCCCTCATGGACTTCGTCTTCTTATAGAAGACTACCCTTATGCTGTTGATGGACTAGAGATATGGTCTGTTATTAAGAAATGGGTCCAAGATTACGTCTCATTGTACTATCCAACAGATAATGATGTGAAAAATGACCCTGAACTCCAACTTTGGTGGAAGGAAGCTGTTGAGACAGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCTAAGATGCAAACAACTGAAGAGCTAATTGAATCATGCACCATCATAATATGGACTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAGTACCCTTATGGAGGGCTTATACTGAACCGCCCAACTCTTAGTAGAAGATTGCTTCCGGAGAAGGGCACTGCAGAATATGAAGAGATGGTGAAGAGCCATCAAAAGGCTTATCTGAGAACAATCACACCAAAATTTCAGGCTCTTGTTGACCTCACAACCATAGAGATCTTGTCAAGGCATGCTTCTGATGAGGTCTATCTTGGAGAGAGGGACAATCCACATTGGACCTCTGATTCAAGAGCATTACAAGCCTTTCAGAAATTTGCAAACAAGCTGAGTGAAGTTGAAGGAAAACTTGAACAGAAGAACAAGGATGCGAGCCTGAGCAATCGACTTGGGCCTGTTCAATTGCCATACACCCTACTTCATCCTACTAGCAACGAAGGGTTAACTTTTAGAGGAGTTCCGAACAGCATCTCTATCTAA 2589 0.4353 MFPGVTGMLNRGHKIKGSVVLMRKNVLDFNSIADVGAGDLRGVIGTGINVIGSAVDGLTAFLGRSVSLQLISATHSDANGQGKVGKDTFLEGIIASLPTLGAGESAFSIHFEWDDSMGIPGAFYIKNYMQVEFYLKTLTLEDVPNQGTIHFVCNSWVYNSKLYKSPRIFFANKPYLPSETPDPLVKYREEELNNLRGDGTGERKEYDRIYDYDVYNDLGNPDWGENYVRPILGGSSTNPYPRRGRTGRSKTTNDPNSEKPGEVYVPRDENFGHLKSSDFLTYAIKSVTRYVLPAFESVFDLNLTPTEFDSFQDVRDLYDGGIRLPLDVISAISLLPVIKELFRTDGEGLLKFPPPHVVQASHSAWMADEEFAREMIAGVNPCMIRSLQEFPPKSNLDPTIYGDQTSKITAEVLDLDGCSLDEALAGRRLFMLDYHDVFMPYLRRINQTQAKAYATRTILFLKDNGALKPVAIELSLPHPDGDQSGAVSQVILPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVLHPIYKLLSPHYRDTMNINALARQNLINANGIIERTFLPSKFSVEMSSAVYKNWVFTDQALPADLIKRGVAVEDSSSPHGLRLLIEDYPYAVDGLEIWSVIKKWVQDYVSLYYPTDNDVKNDPELQLWWKEAVETGHGDLKDKPWWPKMQTTEELIESCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEKGTAEYEEMVKSHQKAYLRTITPKFQALVDLTTIEILSRHASDEVYLGERDNPHWTSDSRALQAFQKFANKLSEVEGKLEQKNKDASLSNRLGPVQLPYTLLHPTSNEGLTFRGVPNSISI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1867 862 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 775 789 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Dod10g1867 862 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Dod10g1867 862 SUPERFAMILY Lipoxigenase 176 862 IPR036226 -
Dod10g1867 862 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 862 - -
Dod10g1867 862 Pfam Lipoxygenase 184 845 IPR013819 GO:0016702|GO:0046872
Dod10g1867 862 Pfam PLAT/LH2 domain 75 170 IPR001024 GO:0005515
Dod10g1867 862 Gene3D - 496 861 - -
Dod10g1867 862 SMART LH2_4 13 172 IPR001024 GO:0005515
Dod10g1867 862 MobiDBLite consensus disorder prediction 239 258 - -
Dod10g1867 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 518 532 IPR020833 GO:0016702|GO:0046872
Dod10g1867 862 PANTHER LIPOXYGENASE 1 862 IPR000907 GO:0016702|GO:0046872
Dod10g1867 862 PRINTS Lipoxygenase signature 500 517 IPR013819 GO:0016702|GO:0046872
Dod10g1867 862 PRINTS Lipoxygenase signature 518 535 IPR013819 GO:0016702|GO:0046872
Dod10g1867 862 PRINTS Lipoxygenase signature 538 558 IPR013819 GO:0016702|GO:0046872
Dod10g1867 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 862 IPR013819 GO:0016702|GO:0046872
Dod10g1867 862 Gene3D PLAT/LH2 domain 4 175 - -
Dod10g1867 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 545 555 IPR020834 GO:0016702|GO:0046872
Dod10g1867 862 Gene3D - 176 274 - -
Dod10g1867 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 175 IPR036392 GO:0005515
Dod10g1867 862 Coils Coil 806 826 - -
Dod10g1867 862 MobiDBLite consensus disorder prediction 234 266 - -
Dod10g1867 862 Gene3D - 364 495 - -
Dod10g1867 862 CDD PLAT_LH2 13 172 IPR042057 -
Dod10g1867 862 Gene3D - 275 363 IPR027433 -
Dod10g1867 862 ProSiteProfiles PLAT domain profile. 44 171 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1867 Dod-Chr10 40140196 40144373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1867 14 862 Acyl Lipid Metabolism Gene Families AT1G55020 56.481 0.0 1000
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1867 K15718 - gmx:547774 1490.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1867 10 40140196 40144373 Dod06g2119 06 42952587 42958448 PCT
Dod06g2113 06 42476712 42478442 Dod10g1867 10 40140196 40144373 PCT