Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1057 ATGCCGACGCCGGTAAGCACAGCGAGGCAATGCTTAACAGACGAGGCGGCGCGTGCTCTCGACGACGCCGTGGCAGTGGCGCGCCGGCGCTGCCACGCACAAACCACCTCCCTCCACGCCGTCTCCGCCCTCCTCTCGCTCCCATCCTCTTCCCTCCGCGACGCCATCACCCGTGCCCGCACCGCCGTCCCCGCCACCGCCGCAATCTCCCCTCGCCTCCAGCTCCGAGCCCTCGAGCTCTCTGTCGGCGTGTCCCTCGACCGCCTCCCCTCCACGAAACCCTCCTCCTCCTCCTCCAACACCACCTCCTCTGCCGCCGCCGACGACGACGGACCTCCAGTGTCGAACTCCCTCATGGCAGCCATAAAGCGCTCACAGGCAAACCAGCGGCGCCACCCTGACACCTTCCACCTTATGCAAATCCACAACAACAGCAACAACCAAATCCAAAACCCTCAGTTCAATCAAGGAACGGCGTCGTTTTTGAAAGTCGAGCTCAAACACTTCGTCTTATCAATCCTCGACGATCCCATCGTGAGTCGGGTCTTGGGCGAAGCGGGTTTTCGGAGCGCCGACATCAAGCTCGCACTTCTCCAACCGCCCCAACCGCCAGCTTCTAGATTCTTCCAGACACGTGCGGCACGCTGCCCGCCTCTCTTTTTGTGTAACCTGGACCCGGTTCGAACCGGACCCGGAACCGGGTTCGGGTTCGGGTTCCCGTTTGTTGACGAGAACTGCAGGAGGGTTGCGGAGGTTTTGAAGAGCAAGCGTAACCCTTTGCTGATTGGGGTTTATGCGAAGAATGCTCTTAAGAGCTTCGTTGAGGTCGTTGAGAAGGGTGGAGGGAGTGGTCTGCTTCCAGCGGAGATGGGTTTGGTGAGGGTGGTTTGCTTGGAGAAGGAGGTTAAGGGGTTTTTGGGTGGGAGCGTGAGCGAGGAGAAGATGGGGTTGAGGTTTGAGGAGGTGGGTAGGGAAGTGGGTGGTGGTGGTGGTGTTGTTGTGAGTTTTGGGGAGGTCGAGCTTTTTGTTGGGGATGGGGTGGTGGATGGTGGTGCTGTTGGGTTTGTTGTTTCGAGGCTGACGAGGTTGTTGTTGGAGTGTGGTGGTGGTTGTGGTGGTGGAGGGAAGGTTTGGTTGATTGGGGTGGCGGAGACCTGTGATGCGTATTCCAAGTTGTTGCGTTTGTTTCCTAATGTGGAAAAGGATTGGGATCTGCATCCGCTCACCGTCACGTCTGCTACCCCTTCAATGGAAGGACTCTACCCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCTACACCTTCTGAAGTCAAAAGTCCTGTAAGCTGTACAAATGCACCTTTTACTTGTTGGGACAAATGCAATGAAAAATGTGAGGAAGAAGTTGCAGCTAATTTGAAGGTAGGTTCTGCTACCCTGGCATCTGCTTGCTCAACAGGCGTGCCTTGGTTACAAAAGGTTAATGTGGACACACATAGAGGATTGGATTTGGCAAAGGTTAATGAAGAAAGTACAAGTATGAATGATAAGATCTTGGGGTTTCAAAAGAGATGGAGTGATAGTTGCCGTAATGTTCATCATGCTAGATCATCACTACCTGAACTTGATATTTCTCAAACAAGACCTCAAGCTCCATTGCTTGAGGGTTTACCATTTGGTTCTGGGTTTAAGGAAAGCAGCAGTAAAGATCCAGCACTTTGCGAGCTCCAATATTCTACTCAAATTTCCCACATGCCTAAAGAGCTGCGTAGTGTTTTTCCATCGAAACAGTTAGCCCCTGTTCCATTATCTTCTGATGCAGTCAGTGTCAATACTGGAAGTGATCATGTACCAATAGTTTCAGAGTCTCAGCAAACTGATGTGCGGACCCCTTGGTTCGCCCCTTCCTCTATGACCAGAATGAGTGTGTCTGATCACACATCATCTTCATCCATTGCTCCCGTGACCACAGATTTAGGACTGGGAACGCTATACGCTGCTCAGGAGCCAGATACACCAAAACGGCAAGATCATAAAAAGCATCTTCCACACTTATCAGAATCCCTTTCAACTGATTTTGATGCTGCAAATGATAATACTTCACACCAAACTCCTAGATCTTCCTGCTCTTATCCATATTTGGAAGGAAAGTTTGATTCAGTAGATCTCAAGTCCCTTAATAAACTTCTCACTGAAATGGTTGGTTGGCAGGATGAGGCCATCCGTGCTATCAATAGAAGTTTAGCCCTTTGTAAAACTGGTGCACAAAAGCAAAGAGGCTCACATGTCAGAGCAGACGTATGGTTTGCTTTCCTTGGACCAGATAGAATCGGAAAAAGGAAAATTGCTTCAGCTCTTGCAGAGACCATATTCAGAAACAAAGAATGCCTAATATCTGTGGATCTGAGCTCAGAGGACAGGTTTTACCCCTTGAACTCGATTTTTGAGGGCCAAAAATCATATTGTCACGATGTGCTCCAGAGGAAGACCGTTGTGGACTACATTGCTGGGGAGTTGAGTAAAAAACCTCATTCAGTTGTCTTTCTTGAAAATGTGGATAAAGCTGATTATCTGGTGCATACTAATTTGTTGCAGGCAATAAGTACAGGTAAATTCCCAGACTCCCATGGAAGGGAAATCAGCATCAGTAATGCAATCTTTATTGCAGCCTCAACCGTATGTAAAGGTAATGGCTCCTCTGTTTTGGAGGGGTCTGAAATGTTTTCTGAGGAAAAAATCCTTGAAGCCAGAAAATGTCAAATGCAATTATTTCTTGGGCATACATCTGAGGATGCCATTAAAAGTGGTAGCACAAATGTCAAAGTTGTACCAAGAAAAGGGTTCTCCAAACCACCATTTCTTAATAAAAGAAAACAGGTTGATAGTAGTGACTCCAAAGAGGGAGGAACTTGCAAGATGCAGAAGCAAGCCAAAGAGGCATCAAGATCCTATCTGGACCTAAATATGCCCATAGAGGAGGTTGGAGAGGGCATCAATGACAACAACGACCATGAAAGCGAATCCACAGTCGAAAACTCGCAAGCCTGTTTAAGTGATTTGTGTAATCAAATTGATGAAAAAGTGGTTTTTAAGCCATTCGATTTCGATGCACTCGCTGATCAAGTGTTGAAAAGCATTAGCACACAATTTCAAAGGACATTCGATTCGGTGTTCCAGCTGGAAATCGATTACGAGGTGATGGTACAGCTGCTTGCAGCTGCTTGGTTATCAGACAAGAAAAATGCAGTGGAGGATTGGATTGAACTTGTTCTTGGCAGAGGCTTCGTTGAAGCCAAGCAGAAATACCACCCTTCAGCTCAGCATATCATGAAACTGGTTAACTGCGAATCCAATTTTGTGGAAGAGCATGCTCCTGGAGTATGCCTTCCTCCCAGAATTAACCTGAACTAG 3408 0.4839 MPTPVSTARQCLTDEAARALDDAVAVARRRCHAQTTSLHAVSALLSLPSSSLRDAITRARTAVPATAAISPRLQLRALELSVGVSLDRLPSTKPSSSSSNTTSSAAADDDGPPVSNSLMAAIKRSQANQRRHPDTFHLMQIHNNSNNQIQNPQFNQGTASFLKVELKHFVLSILDDPIVSRVLGEAGFRSADIKLALLQPPQPPASRFFQTRAARCPPLFLCNLDPVRTGPGTGFGFGFPFVDENCRRVAEVLKSKRNPLLIGVYAKNALKSFVEVVEKGGGSGLLPAEMGLVRVVCLEKEVKGFLGGSVSEEKMGLRFEEVGREVGGGGGVVVSFGEVELFVGDGVVDGGAVGFVVSRLTRLLLECGGGCGGGGKVWLIGVAETCDAYSKLLRLFPNVEKDWDLHPLTVTSATPSMEGLYPKSSLMGSFVPFGGFFSTPSEVKSPVSCTNAPFTCWDKCNEKCEEEVAANLKVGSATLASACSTGVPWLQKVNVDTHRGLDLAKVNEESTSMNDKILGFQKRWSDSCRNVHHARSSLPELDISQTRPQAPLLEGLPFGSGFKESSSKDPALCELQYSTQISHMPKELRSVFPSKQLAPVPLSSDAVSVNTGSDHVPIVSESQQTDVRTPWFAPSSMTRMSVSDHTSSSSIAPVTTDLGLGTLYAAQEPDTPKRQDHKKHLPHLSESLSTDFDAANDNTSHQTPRSSCSYPYLEGKFDSVDLKSLNKLLTEMVGWQDEAIRAINRSLALCKTGAQKQRGSHVRADVWFAFLGPDRIGKRKIASALAETIFRNKECLISVDLSSEDRFYPLNSIFEGQKSYCHDVLQRKTVVDYIAGELSKKPHSVVFLENVDKADYLVHTNLLQAISTGKFPDSHGREISISNAIFIAASTVCKGNGSSVLEGSEMFSEEKILEARKCQMQLFLGHTSEDAIKSGSTNVKVVPRKGFSKPPFLNKRKQVDSSDSKEGGTCKMQKQAKEASRSYLDLNMPIEEVGEGINDNNDHESESTVENSQACLSDLCNQIDEKVVFKPFDFDALADQVLKSISTQFQRTFDSVFQLEIDYEVMVQLLAAAWLSDKKNAVEDWIELVLGRGFVEAKQKYHPSAQHIMKLVNCESNFVEEHAPGVCLPPRINLN* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1057 1135 ProSiteProfiles Clp repeat (R) domain profile. 8 203 IPR004176 -
Dod08g1057 1135 Gene3D - 10 200 IPR036628 -
Dod08g1057 1135 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1135 - -
Dod08g1057 1135 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1135 - -
Dod08g1057 1135 MobiDBLite consensus disorder prediction 88 116 - -
Dod08g1057 1135 Pfam AAA domain (Cdc48 subfamily) 767 898 IPR003959 GO:0005524|GO:0016887
Dod08g1057 1135 MobiDBLite consensus disorder prediction 88 110 - -
Dod08g1057 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 1072 IPR027417 -
Dod08g1057 1135 Gene3D - 713 960 IPR027417 -
Dod08g1057 1135 MobiDBLite consensus disorder prediction 951 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1057 Dod-Chr8 13352046 13357696 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1057 - - ahf:112702898 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1057 08 13352046 13357696 Dod08g1057 08 13352046 13357696 ECH
Dod08g1057 08 13352046 13357696 Dod04g0361 04 4781380 4786820 ECH
Dod07g0290 07 3615014 3619490 Dod08g1057 08 13352046 13357696 ECH
Dod05g0542 05 7819616 7826889 Dod08g1057 08 13352046 13357696 ECH
Dod08g1057 08 13352046 13357696 Dod05g0542 05 7819616 7826889 ECH
Dod05g0542 05 7819616 7826889 Dod08g1057 08 13352046 13357696 PCT