Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0542 ATGCCGACGCCGGTAAGCGCAGCGAGGCAATGCCTGACGGAGGAGGCAGCGCGTGCGCTCGACGACGCGGTGGCGGTGGCGCGGCGTCGGAGCCACGCGCAGACGACGTCACTCCACGCCGTCTCCGCCCTCCTGGCCCTCCCCTCCGCCGCGCTCCGCGAAGCCTGCGGCCGCGCCCGCAGCCTCTCCTACTCCCCTCGCCTCCAGTTCCGCGCCCTAGAGCTCTCCGTCAGCGTCTCCCTCGACCGCCTCCCCACCGCCGCCAAATCCTCCTCCTCCTCCTCCTCTTCCTCCTCCGCCGCCGCAGCAAACGACGGACCTCCGGTTTCCAACTCCCTCATGGCCGCCATAAAACGCTCCCAGGCCAACCAGCGCCGTCACCCCGAATCCTTCCACTACATGATCCTCCACCAACACCAACAACAACAGAACCAGAACCAAACGACGTCGTTTCTGAAAGTCGAGCTGAAGCACTTCATTCTCTCAATCCTCGACGACCCTATCGTAAGTAGGGTCTTCGGTGAAGCCGGTTTCCGAAGCTACGATATCAAGCTCGCGTTGCTTCAACCACCTCCTCTTCACAATAACGGTAACCGGTTCTTTTATTCCCGGATGAACCGGCCGGTTTTTCTTTGCAACCTTGAACCGAGTGGTGGGCCTAGTGGACCGGGCTTATTGGGCCCGCCGTTTGTTGGGCCGGACCAGAACTGCAGGAGGATCGTGGAGGTTCTCTTGAGGAAGGAGAAACGGAACCCGCTGTTAATGGGAGTGTACGCTAAGGGCGCCCTCAAGGGGTTCATGGAAAGTGTTAACAGGGGTAAAATGGGGATTTTGCCTCCTGAGCTTGCTGGGTTGAACGTGGTGTGTGTTGAGAAGGAGATTGGGGAGTTTGTTATGGGTGAGAGGAGTGAGGAGATGATGGAGTTGAGGTTCAGAGAAGTTAGTTGTTTGGCTGAGAAGTGTGTTGTGGGTGGTGGTGGTGGGATTGTTGTGAGTTTCGGAGAGGTTGAGGTTTTCGTGAGGGACGAGGGCGACAAGGCGGTTAATTCGGTTAAGTTTGTTGTGGAGCAGTTGGGGAGGTTGTTGGAGGCGGGGGGCAGGAGAAACGTTTGGTTGGTTGGAGTGGCGGCAACTTCGGATGCGTATTCCAAGTTCCTGGGTTTGTTCCCAACTGTTGATAGGGATTGGGATCTGCATCTACTCACCGTCACTATTTCTTCTTCTGCCACAACTCCGATGGAAGGACACTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTCGGCGGGTTCTTCTCAACGCCTTCTGAGTTCAGAAGCCCCATAAGCTGTCCGAATGCATCTCTAACTCGATGTGACAAGTGCAATGAAAAGTATGAGCAAGAAGTCGCTGATATTCTGAAGGTAGGTCCTGCTGCTACATCAGCAACTGGTCACTCAACAAGCTTGCCTTGGTTACAAAAGGTTAATTTGGACACAGATAGAGAATTGGATTTGGCAAAGGCTAATGAAGACAACACAAGTTTGAATGCTAAGATCTTCGGATTACAAAGGAAATGGAGTGACAATTGTCAACGCGCTCATCACAACCGATCATTACCAGACTTTGATATTTCCCCAACAAGGCCCCAAGCTTCATCATCATTTGGGAGGTTTCCATTTGGTGCAGGTTTTAATGAAAGTAGCAGCAAAGTAGGTCTATCCCTGAATGAAATCCAACATTCCAATCAAATCTCATACCTTCCTAAACAGTTAAAAAGTATAAGTTCCCCATCCAAACAGATATTACCAGTTTCTTCATTAAATTTTGATGCGATTGCTGTTAGTACCAACACTGAAGCAGGCCAAGTACCAAAAGTTTCAAAAAGTCAGCAAAGTGACATGCCTTGTGCTTGGATTTCATCTTCGTCCCTTACTCCTGTGACCACAGATTTGGGATTGGGAACTATATATACATCAGCTGCTCATGAGCCAGATACCCCGAAACTGTGTGATCATAAGAGGCATCTTCAGCACTTGTCAGATTCCCTCTCAACTGATTTTGATGCTCTGAATGAGAGCAGCACTACACACCAAATTGCTATATCTTCGTCTCCCTGCTCTGGCCCAACTTTTGAAGGGAATTTTGATTCAGTAGATTTCAAATCACTTTGCCAACTTCTCACTGAAAAGGTTGGCTGGCAAAATGAGGCCATATATGCTGTAAGTCAAACTGTTTCCCTTTGTAGATCCGGTGCTGGAAAGCGTGGCGGCTCGCGTGTTAGAGCAGACGTATGGCTTGCTTTCCTTGGACCAGATAGACTTGGGAAAAGGAAACTTGCTTCAGCACTTGCAGAGTGTTTACTTGGAAACAAAAATAGCCTAATCTCTGTGGATTTGAGCTCCGAGGACAGCTTCTATCCATTAAACTCAATTTTCGAATTCCAATCTTCTGATTGCCATGATGCGCTTCGGAGGAAGACAGTTGTGGACTACATTGCTGGGGGGATAAGTAAAAAACCAAATTCAGTTATCTTTCTTGAAAATGTGGATAAAGCTGATTTTCTGTTGCGGAATAGTTTGTTCCAAGCAATAAGAACTGGTAGATTTCCATACTCACTTGGAAGGGAAATCAGCATCAACAATGCAGTCTTTATTTTAACCTCAGCCATGCATAACAGTCGCGGCTCTTTTGTTTCAGAGAAGGAGCCTAAAATGTTTCCTGAGGAAAGAATCCTCGAAGCCAAAAGATGTCAAATGCAGTTGTTACTTGGACATGCTTCCGAGGATGCCAAAAGAAATGGCAGCACAAATGTGAAGGTTGCACTGAGAAAAGACACCTCCAAACCAACACTCATGAATAAAAGAAAGTTAGTTCAAAGTTGCGACTCCAAAGAGAAAGCAACATGCAAGTCACACAAACTGGTCAAGGACACATCAAGGTCCTATCTGGATCTAAATATGCCTTTAGAGGAGGTTGAGGAGGGCATCAATATCAATGATTATGAAAGTGAATCTGAAGTTGAAAACTCTGAAGCCTGGTTACATGATTTCTGGCATCAAGTTGATGAAAAAGTGGTCTTTAAGCCATTCGATTTCGATTCGCTTGCTGAGCAAGTAATAAAAAGCATTGAAATACAGTTTCAAAGGGCATTTGGGTCAGATTTTTTGCTGGAAATTGAATATGAGGCCATGGCACAGATACTTGCGGCTGCTTGGTTATCAGACAAGAAAAATGCAGTGGAGGATTGGGTTGAAAATGTTCTTGGCAGAAGCTTTGCTGAAGCACAAAAGAAGTACCACCCTGAAGCTCAGTTTGTGATGAAACTGGTTAAATGTGAAAGCAATTTTGTGGAAGATCAAGCTCATGGAGTGTGCCTTCCAGCTAGAATAAACTTGAACTGA 3387 0.4762 MPTPVSAARQCLTEEAARALDDAVAVARRRSHAQTTSLHAVSALLALPSAALREACGRARSLSYSPRLQFRALELSVSVSLDRLPTAAKSSSSSSSSSSAAAANDGPPVSNSLMAAIKRSQANQRRHPESFHYMILHQHQQQQNQNQTTSFLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPLHNNGNRFFYSRMNRPVFLCNLEPSGGPSGPGLLGPPFVGPDQNCRRIVEVLLRKEKRNPLLMGVYAKGALKGFMESVNRGKMGILPPELAGLNVVCVEKEIGEFVMGERSEEMMELRFREVSCLAEKCVVGGGGGIVVSFGEVEVFVRDEGDKAVNSVKFVVEQLGRLLEAGGRRNVWLVGVAATSDAYSKFLGLFPTVDRDWDLHLLTVTISSSATTPMEGHYSKSSLMGSFVPFGGFFSTPSEFRSPISCPNASLTRCDKCNEKYEQEVADILKVGPAATSATGHSTSLPWLQKVNLDTDRELDLAKANEDNTSLNAKIFGLQRKWSDNCQRAHHNRSLPDFDISPTRPQASSSFGRFPFGAGFNESSSKVGLSLNEIQHSNQISYLPKQLKSISSPSKQILPVSSLNFDAIAVSTNTEAGQVPKVSKSQQSDMPCAWISSSSLTPVTTDLGLGTIYTSAAHEPDTPKLCDHKRHLQHLSDSLSTDFDALNESSTTHQIAISSSPCSGPTFEGNFDSVDFKSLCQLLTEKVGWQNEAIYAVSQTVSLCRSGAGKRGGSRVRADVWLAFLGPDRLGKRKLASALAECLLGNKNSLISVDLSSEDSFYPLNSIFEFQSSDCHDALRRKTVVDYIAGGISKKPNSVIFLENVDKADFLLRNSLFQAIRTGRFPYSLGREISINNAVFILTSAMHNSRGSFVSEKEPKMFPEERILEAKRCQMQLLLGHASEDAKRNGSTNVKVALRKDTSKPTLMNKRKLVQSCDSKEKATCKSHKLVKDTSRSYLDLNMPLEEVEEGININDYESESEVENSEAWLHDFWHQVDEKVVFKPFDFDSLAEQVIKSIEIQFQRAFGSDFLLEIEYEAMAQILAAAWLSDKKNAVEDWVENVLGRSFAEAQKKYHPEAQFVMKLVKCESNFVEDQAHGVCLPARINLN* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0542 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 885 IPR027417 -
Dod05g0542 1128 ProSiteProfiles Clp repeat (R) domain profile. 8 198 IPR004176 -
Dod05g0542 1128 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1128 - -
Dod05g0542 1128 Coils Coil 500 520 - -
Dod05g0542 1128 Gene3D - 10 189 IPR036628 -
Dod05g0542 1128 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1128 - -
Dod05g0542 1128 MobiDBLite consensus disorder prediction 88 106 - -
Dod05g0542 1128 MobiDBLite consensus disorder prediction 88 111 - -
Dod05g0542 1128 Gene3D - 707 949 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0542 Dod-Chr5 7819616 7826889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0542 - - gmx:100776148 1373.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0542 05 7819616 7826889 Dod05g0542 05 7819616 7826889 ECH
Dod05g0542 05 7819616 7826889 Dod08g1057 08 13352046 13357696 ECH
Dod05g0542 05 7819616 7826889 Dod04g0361 04 4781380 4786820 ECH
Dod08g1057 08 13352046 13357696 Dod05g0542 05 7819616 7826889 ECH
Dod07g0290 07 3615014 3619490 Dod05g0542 05 7819616 7826889 ECH
Dod05g0542 05 7819616 7826889 Dod08g1057 08 13352046 13357696 PCT