Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0400 ATGGAGCCAGCAGTCAAGATCATTCCAACCAATGCCAAATACTCCTGCATCATCTTCTTAGCCATTTTATTGGCTCTCTTAACTTCAGCATTGGCTTCAGCAAATGCCAAAATTCACGAGCATGAGTTTGTTGTTCAAGCAACTCCAGTGAAGAGGCTGTGCAAAACTCACAACACCATCACCGTGAACGGACAATACCCGGGGCCAACTTTGGAAATCAGCAATGGGGACACTTTGGTCGTCAAAGTCACTAACAAAGCTCGTTACAATGTGACCATTCACTGGCATGGTATTAGACAAATGAGAACAGGGTGGGCAGATGGACCAGAATTTGTAACTCAGTGCCCCATTCGTCCTGGAGGGAGTTACACCTATCGCTTCACCGTTCAAGGACAAGAAGGAACACTTTGGTGGCACGCTCATAGCTCATGGCTAAGAGCCACCGTTTATGGAGCTTTAATCATTCGTCCTAGGAAAGGGGAGGCCTACCCTTTCCCAAAACCAAAGCGCGAAACACCCATTCTTTTAGGGGAATGGTGGGACACAAACCCTATTGATGTTGTGAGGCAGGCCACACGAACTGGAGCGGCCCCTAACGTGTCTGATGCATACACTATTAATGGTCAACCTGGTGATCTCTACAAGTGCTCTAGCAAAGGAACCACCATTGTTCCAATAGATTCCGGCGAGACTAATCTCCTCCGTATCATTAACGCCGCACTCAACCAGCCTCTCTTCTTCACCGTAGCCAACCACAAGCTAACAGTGGTTGGAGCCGATGCCTCTTACCTCAAACCCTTCACCACCAAAGTCCTCATGTTAGGACCTGGTCAAACCACCGATGTTCTGATCACCGGTGACCAGTCACCTTCCAAGTACTACATGGCAGCACGTGCCTACCAATCAGCACGAAACGCACCGTTTGACAAAACCACTACCACCGCCATTCTCGAATACAAATCAGCCATTTCCCACTCCAAAAAAGGCAAAGCAGCACTCAAACCACTCATGCCCCCACTCCCTGCTTACAACGACACAAACACAGTCACCGCCTTCAGCAGAAGCCTCAGAAGCCCAAGAAAAGTTGAGGTTCCCACTGAGATAGACGATAGCCTTTTCTTCGCTGTAGGGTTAGGACTTAACAAGTGCCCACCAAATTTCAGAGCAAGGAGGTGCCAGGGACCCAATGGGACAAGGTTCACAGCAAGCATCAACAATGTTTCTTTTGTCCTTCCAAACAACATTTCAATATTGCAAGCTCATCAACTTGGAATCCCTGGAGTGTTCACCACTGATTTTCCGGCGAGACCTCCTGTGAAATTCGATTACACCGGTAACGTGAGCCGTTCGCTGTGGCAACCCATTCCGGGGACTAAAGCGTATAAGCTCAAGTATGGGTCGAGGGTGCAGATTGTGCTGCAGGACACGAGCATTTTCACCCCTGAGAACCACCCGATTCACCTTCATGGGTATGATTTCTACATCGTTGCGGAGGGGTTCGGGAATTTCGACCCCAAGAAGGATGCGAAAAAGTTCAACCTTGTTGATCCACCTCTGAGGAACACGGTGGCAGTGCCTGTTAATGGATGGGCAGTTATCCGATTTGTTGCTGATAACCCAGGTGCTTGGCTTATGCATTGTCACTTGGATGTTCACATCACTTGGGGTTTGGCCACAGTGCTCTTGGTAGAGAATGGAGTTGGGAAATTGCAATCCATAGAGCCCCCTCCAGTGGACCTGCCTCTCTGTTAG 1752 0.4903 MEPAVKIIPTNAKYSCIIFLAILLALLTSALASANAKIHEHEFVVQATPVKRLCKTHNTITVNGQYPGPTLEISNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPRKGEAYPFPKPKRETPILLGEWWDTNPIDVVRQATRTGAAPNVSDAYTINGQPGDLYKCSSKGTTIVPIDSGETNLLRIINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLITGDQSPSKYYMAARAYQSARNAPFDKTTTTAILEYKSAISHSKKGKAALKPLMPPLPAYNDTNTVTAFSRSLRSPRKVEVPTEIDDSLFFAVGLGLNKCPPNFRARRCQGPNGTRFTASINNVSFVLPNNISILQAHQLGIPGVFTTDFPARPPVKFDYTGNVSRSLWQPIPGTKAYKLKYGSRVQIVLQDTSIFTPENHPIHLHGYDFYIVAEGFGNFDPKKDAKKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHITWGLATVLLVENGVGKLQSIEPPPVDLPLC* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0400 583 CDD CuRO_2_LCC_plant 173 319 IPR034285 -
Dod04g0400 583 TIGRFAM laccase: laccase 36 583 IPR017761 GO:0046274|GO:0048046|GO:0052716
Dod04g0400 583 Pfam Multicopper oxidase 171 321 IPR001117 -
Dod04g0400 583 Gene3D - 387 583 IPR008972 -
Dod04g0400 583 CDD CuRO_3_LCC_plant 428 566 IPR034289 GO:0005507
Dod04g0400 583 Pfam Multicopper oxidase 433 565 IPR011706 GO:0005507|GO:0016491
Dod04g0400 583 SUPERFAMILY Cupredoxins 34 184 IPR008972 -
Dod04g0400 583 Pfam Multicopper oxidase 45 159 IPR011707 GO:0005507
Dod04g0400 583 PANTHER MULTI-COPPER OXIDASE 14 583 IPR045087 -
Dod04g0400 583 SUPERFAMILY Cupredoxins 165 359 IPR008972 -
Dod04g0400 583 CDD CuRO_1_LCC_plant 41 157 IPR034288 GO:0005507
Dod04g0400 583 ProSitePatterns Multicopper oxidases signature 1. 541 561 IPR033138 -
Dod04g0400 583 ProSitePatterns Multicopper oxidases signature 2. 546 557 IPR002355 GO:0005507
Dod04g0400 583 SUPERFAMILY Cupredoxins 371 583 IPR008972 -
Dod04g0400 583 Gene3D - 169 361 IPR008972 -
Dod04g0400 583 PANTHER LACCASE 14 583 - -
Dod04g0400 583 Gene3D - 26 157 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0400 Dod-Chr4 5242745 5246992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0400 K05909 - gmx:547704 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1004 08 12454370 12457338 Dod04g0400 04 5242745 5246992 ECH
Dod04g0400 04 5242745 5246992 Dod04g0400 04 5242745 5246992 ECH
Dod04g0400 04 5242745 5246992 Dod08g0649 08 7645832 7650118 PCT