Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1004 ATGGAGACTAATCGCCTCCCTGGCAAGTCAAGCTGCTCTTGGCTCTTACTTTGCCTACTTATTATCATTGCTTCCCATGCTTCAACTGCAGAGGATCACTACCATGAATTTGTTATTCAAACTACGCCAGTGAAGAGGCTGTGCAGAACACAAAACATACTCACTGTAAATGGGCAGTTTCCCGGCCCTACCGTGGAAGCAAGAAATGGAGATTCTCTTGCAATCAAAGTAACAAATGCTGGACCTTACAACATCTCCATCCACTGGCATGGATTAAGGATGCTGAGAAATCCATGGGCAGATGGTCCTAGTTATGTGACTCAGTGTCCGATCCAACCAGGTGGAACTTACACATACCGCTTTACAATACAAAACCAAGAGGGAACATTATGGTGGCATGCACACACTGGCTTCCTAAGAGCCACTGTTTATGGAGCTCTAATCATCTACCCAAAATTGGGTTCACCTTATCCTTTCTCTATGCCTAAGCGAGAATACCCTCTCCTTCTTGGGGAATGGTTTGATAGGGATCCTATGGCTCTCTTGAGGCAGACACAATTTACAGGAGCACCTCCAAATGTATCTATTGCATACACTATCAATGGTCAACCTGGAGATCTTTACAGATGTTCTAGTCAAGAAACCGTACGTGCTCCAGTAGATGTTGGTGAGACAATTCTCTTGAGAATCATCAACAGTGCACTCAATCAAGAACTCTTCTTCTCAATTGCCAACCACAGGATGACTGTTGTTGGCACAGACGCTGCTTACACCAAGCCTTTCAACACTGGAGTCATCATGATAGGGCCTGGCCAGACAATCAATGTCCTGGTCACCGCCGATCAACCGCCGGGCCGATACTACATGGCAGCACGCGCATATCAAACAGCCATGAATGCCGCCTTTGACAACACCACCGCCACTGCAATCCTAGAATACAAATCAGCCAGCTGCAGTAGAAAGGGACCATCTCCAAGACCAATATTGCCAGCTTTGCCTGCCTTCAATGATACAGCCACAGCAACTGCATTCACTTCTGGGATCAGGGGTCTTTCCAAGATCAATGTCTTCACAAATGTTGAAGTGAGCCTGTATTTCACAGTAGGGTTGGGATTGATCAACTGCACAAATCCTAATAGTCCAAGATGTCAAGGACCAAATGGAACCCGCTTCACAGCCAGCATAAACAATGTTTCTTTTGTACCCCCAAGAACAACCTCCTTAATGCAAGCCTACTATCAAGGCATACCTGGTGTTTTCACCACAGACTTTCCTCCTGTTCCCCCTGTACAATTCAATTACACCGGCAACGTGCCCCGGGGGCTATGGACACCTTCCCGAGGAACTAAGCTCGTCAAGTTGAAGTATGGATCCAATGTGCAAATTGTTTTTCAGGATACAAGCATAGTGACTACTGAGGACCACCCTATGCACACTCATGGATTCCACTTCTTTGTAGTTGGTTCAGGTTTTGGCAATTTCAACCCTGCAACAGACCCTGCTAGGTTTAACCTTGTTGATCCACCAGTGAGGAACACCATTGGAACACCTCCTGGAGGATGGGTGGCCATTCGATTTGTTGCTGATAATCCAGGAATTTGGTTCTTGCATTGTCACATAGACTCACATCTGAATTGGGGTCTGGCAAATGCACTTCTGGTAGAGAATGGAGTTGGGCCATCACAGTCAGTGATACCACCACCACCTGATCTGCCTCAATGCTAA 1725 0.4649 METNRLPGKSSCSWLLLCLLIIIASHASTAEDHYHEFVIQTTPVKRLCRTQNILTVNGQFPGPTVEARNGDSLAIKVTNAGPYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGTYTYRFTIQNQEGTLWWHAHTGFLRATVYGALIIYPKLGSPYPFSMPKREYPLLLGEWFDRDPMALLRQTQFTGAPPNVSIAYTINGQPGDLYRCSSQETVRAPVDVGETILLRIINSALNQELFFSIANHRMTVVGTDAAYTKPFNTGVIMIGPGQTINVLVTADQPPGRYYMAARAYQTAMNAAFDNTTATAILEYKSASCSRKGPSPRPILPALPAFNDTATATAFTSGIRGLSKINVFTNVEVSLYFTVGLGLINCTNPNSPRCQGPNGTRFTASINNVSFVPPRTTSLMQAYYQGIPGVFTTDFPPVPPVQFNYTGNVPRGLWTPSRGTKLVKLKYGSNVQIVFQDTSIVTTEDHPMHTHGFHFFVVGSGFGNFNPATDPARFNLVDPPVRNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLANALLVENGVGPSQSVIPPPPDLPQC* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1004 574 Gene3D - 381 574 IPR008972 -
Dod08g1004 574 ProSitePatterns Multicopper oxidases signature 2. 537 548 IPR002355 GO:0005507
Dod08g1004 574 SUPERFAMILY Cupredoxins 358 574 IPR008972 -
Dod08g1004 574 SUPERFAMILY Cupredoxins 32 178 IPR008972 -
Dod08g1004 574 Pfam Multicopper oxidase 165 315 IPR001117 -
Dod08g1004 574 CDD CuRO_1_LCC_plant 35 151 IPR034288 GO:0005507
Dod08g1004 574 Gene3D - 163 353 IPR008972 -
Dod08g1004 574 CDD CuRO_2_LCC_plant 167 313 IPR034285 -
Dod08g1004 574 CDD CuRO_3_LCC_plant 419 557 IPR034289 GO:0005507
Dod08g1004 574 PANTHER MULTI-COPPER OXIDASE 8 574 IPR045087 -
Dod08g1004 574 TIGRFAM laccase: laccase 32 574 IPR017761 GO:0046274|GO:0048046|GO:0052716
Dod08g1004 574 PANTHER LACCASE-13 8 574 - -
Dod08g1004 574 Gene3D - 17 151 IPR008972 -
Dod08g1004 574 Pfam Multicopper oxidase 39 152 IPR011707 GO:0005507
Dod08g1004 574 ProSitePatterns Multicopper oxidases signature 1. 532 552 IPR033138 -
Dod08g1004 574 Pfam Multicopper oxidase 424 556 IPR011706 GO:0005507|GO:0016491
Dod08g1004 574 SUPERFAMILY Cupredoxins 163 351 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1004 Dod-Chr8 12454370 12457338 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1004 K05909 - gmx:100786719 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1004 08 12454370 12457338 Dod04g0400 04 5242745 5246992 ECH
Dod08g1004 08 12454370 12457338 Dod08g1004 08 12454370 12457338 ECH