Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0747 ATGGGCAGGGAGGGTAAGTCGTTGAGAGGAATATGCTTATCTGCTCTTCTCGTTCATGGCAAACCTGTGGAACTTATGTTGGGAATGAAAACTCATCTGAATCCTCCAAATAGTTCTTTACTTTTTCCCCGATTTCTGAGGTGTTGGGCTGAGCTCGAAGTTGATGTTAGATTCGGCTGTTTGTATGCAGCAACATTCACTATCGTGAACAAGTGTAGCTATACAGTTTGGCCAGGCATTTTGTCTGGCGCCGGAACTGCACAGCTCTCCACCACCGGCTTCGCTCTCCAGTCCGGCGAGTCCAGCGTCCTGCAAGTCCCCACCACCTGGTCCGGCCGTCTCTGGGGTCGAACACTCTGCGTGCAGGACTCCGCCGGAAAATTCTCCTGCGTCACCGGCGATTGTGGCTCCTCCACTTTAGAATGCGCCGGTGGCGGCGCAGCACCACCGGCGACACTTGCGGAGTTCACATTGAACGGCGCCGGGGGGCTCGATTTCTATGACGTCAGCCTCGTGGACGGGTACAATCTTCCGATGACGGTGGAGCCTCAGGGCGGGAGCGGAGCCGGGAATTGCACGACAACGGGCTGCGTGGGCGATCTGAACAGTGCTTGCCCGACGGAGCTGAAGGTGACGACAGCCGCCGACGGGGGAGAGGGCGTGGCGTGTAAAAGCGCATGCGGAGCGTTTGGGGATCCGCAATACTGCTGCAGTGGTGCTTACGCGACTCCCGACACATGCAAACCCAGCAGTTATTCGGAGTTCTTCAAGAGCGCCTGCCCACGCGCCTACAGTTACGCGTATGACGATGGCACCAGCACCTTCACCTGTGCCTCTGCGGATTACCTCATCACTTTCTGCAATTCCCCCTCCACAAGTTTGATAAAGTCGGGGACGGGGAAATACCCGGTGGCGGCGGCGGACGTATCAGGCGGCGCCACCGTGGGAGGATCAGCAAGACTGGCGGTGGTTATGACCGCCGTTACGGTGGGGGTTTGGCGGTTATTTTCGCAACAGAATTAG 1023 0.5748 MGREGKSLRGICLSALLVHGKPVELMLGMKTHLNPPNSSLLFPRFLRCWAELEVDVRFGCLYAATFTIVNKCSYTVWPGILSGAGTAQLSTTGFALQSGESSVLQVPTTWSGRLWGRTLCVQDSAGKFSCVTGDCGSSTLECAGGGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMTVEPQGGSGAGNCTTTGCVGDLNSACPTELKVTTAADGGEGVACKSACGAFGDPQYCCSGAYATPDTCKPSSYSEFFKSACPRAYSYAYDDGTSTFTCASADYLITFCNSPSTSLIKSGTGKYPVAAADVSGGATVGGSARLAVVMTAVTVGVWRLFSQQN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0747 340 PANTHER OS03G0233200 PROTEIN 62 287 IPR001938 -
Dere13g0747 340 Pfam Thaumatin family 70 287 IPR001938 -
Dere13g0747 340 SUPERFAMILY Osmotin, thaumatin-like protein 64 287 IPR037176 -
Dere13g0747 340 FunFam THAUMATIN-LIKE PROTEIN 1 64 288 - -
Dere13g0747 340 PRINTS Pathogenesis-related protein signature 65 77 IPR001938 -
Dere13g0747 340 PRINTS Pathogenesis-related protein signature 165 181 IPR001938 -
Dere13g0747 340 PRINTS Pathogenesis-related protein signature 278 287 IPR001938 -
Dere13g0747 340 PRINTS Pathogenesis-related protein signature 113 124 IPR001938 -
Dere13g0747 340 Gene3D Thaumatin 64 287 IPR037176 -
Dere13g0747 340 CDD TLP-PA 65 287 - -
Dere13g0747 340 SMART tha2 66 288 IPR001938 -
Dere13g0747 340 ProSiteProfiles Thaumatin family profile. 63 287 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0747 Dere-ChrDere13 9350172 9353899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0747 61 325 Receptor kinase-like Gene Family AT5G38280 46.992 4.22e-84 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0747 13 9350172 9353899 Dere13g0747 13 9350172 9353899 ECH
Dere13g0747 13 9350172 9353899 Dere04g0074 04 814554 816230 ECH
Dere06g0102 06 1128304 1131310 Dere13g0747 13 9350172 9353899 ECH