Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0102 ATGGGACGTCTTCTTCTCCTTCTCATGATCCTCACCTTCCTCTCATTATCTTTCCTATCAGAGGTACAATCGGCGTCGTTCAAGCTTGTGAACAAGTGTCGCTACACGGTATGGCCGGGTTTGCTCTCCGGCGCCAATTCGCCGCAGCTCCCCACCACTGGATTCGCTCTTCAAAGTGGCAAGTCAAAGACCATAAACATCCCGAAATCTTGGTCGGGTCGGATATGGGCTCGGACCCTCTGTGGCCTAGATTCCGACGGCAAGTTCTCCTGCCTCACCGCAGACTGTGGCTCCGGTAAAGTAGAGTGTGCAGGCGGGGCTAAGCCGCCGGCGACGTTGGCTGAGTTCACTCTCAACGGGGCCGACGGGTTAGATTTCTACGACGTGAGCTTGGTCGACGGCTACAACCTGCCGATGCTGATCGTTGCGAAAGGAGGAAAGCGCGGCGGATGCAGCGCTACCGGGTGTTTGGTAGACCTGAACGGAGCGTGCCCGGCGGATCTTAGGGTGGCGCGTGGGAATCGGACTGGTTCTCGTGGTGGTAGCATGGCTTGCAGGAGCGCGTGCGAGGCTTTTGGCGATCCGCAGTATTGTTGCAGTGAGGCTTACTCTACGCCCGACACGTGTCACCCATCTGTATACTCACAATTCTTTAAGCATGCTTGCCCACGCGCGTATAGCTACGCCTACGATGACAAGACTAGCACTTACACGTGCGCCTCAGCAGACTACTTGATCATATTCTGCCCCTTACCCTACACAAGCCAAAAGGTGCTGGGAGCACGAAAAGATGGTGCACCACTTCCTCTGGTGAACAAGACCATGATGTACTTACATTCAGGCGTTTCTTCATCAACAGGTCTGAACCAAATGCAGATTTTGGCTTATGTTGCCTCTCTTGCAGCAACATTTTTCCTCTTCTGCCCTCTTTTTCACCCTTTGTGA 945 0.5407 MGRLLLLLMILTFLSLSFLSEVQSASFKLVNKCRYTVWPGLLSGANSPQLPTTGFALQSGKSKTINIPKSWSGRIWARTLCGLDSDGKFSCLTADCGSGKVECAGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGKRGGCSATGCLVDLNGACPADLRVARGNRTGSRGGSMACRSACEAFGDPQYCCSEAYSTPDTCHPSVYSQFFKHACPRAYSYAYDDKTSTYTCASADYLIIFCPLPYTSQKVLGARKDGAPLPLVNKTMMYLHSGVSSSTGLNQMQILAYVASLAATFFLFCPLFHPL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0102 314 SUPERFAMILY Osmotin, thaumatin-like protein 26 250 IPR037176 -
Dere06g0102 314 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Dere06g0102 314 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Dere06g0102 314 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Dere06g0102 314 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Dere06g0102 314 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Dere06g0102 314 Gene3D Thaumatin 25 250 IPR037176 -
Dere06g0102 314 SMART tha2 27 250 IPR001938 -
Dere06g0102 314 ProSiteProfiles Thaumatin family profile. 24 250 IPR001938 -
Dere06g0102 314 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Dere06g0102 314 Pfam Thaumatin family 31 250 IPR001938 -
Dere06g0102 314 CDD TLP-PA 26 249 - -
Dere06g0102 314 FunFam THAUMATIN-LIKE PROTEIN 1 25 250 - -
Dere06g0102 314 PANTHER OS03G0233200 PROTEIN 13 250 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0102 Dere-ChrDere06 1128304 1131310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0102 7 250 Receptor kinase-like Gene Family AT5G38280 48.988 2.10e-82 260
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0102 06 1128304 1131310 Dere06g0102 06 1128304 1131310 ECH
Dere06g0102 06 1128304 1131310 Dere13g0747 13 9350172 9353899 ECH
Dere06g0102 06 1128304 1131310 Dere04g0074 04 814554 816230 ECH