Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02243 ATGATGCCATGTTTCATCACATCAAAGTCAAGCCCCTCTttcttccttcttctcttcttctgcctctttctctttctcttctcagcttctacattctctaatgcacgtgtaacagATGGCGTTGGCGAGAAAGAGGTGGAGACGATGAAATCAATGTCGGAAGCAAAGAAGAACGCGAACATGAGTCTCGTGCTTGCCAAGGAAAGAACTCGCCGGAGAGATTTCTTTAACCATTTTAACCTTTACACCGGCGGTTGGAATATCAGCGATTCCGATTATATCACGTCAGTTCTTTCTACGGCTGTTCCTTTTTTTGCAGTGGCTGTAGCGTGGTTCGTTGTTTTTGCACTTTTCTTATTCATCTGTGCGTGTTACTGCTGTTGTAACGGAGAGCCAAATGACTATTCTAAAACTCTCCATCACTTCTCCTGCATCTTGCTTATCCTCTGCACCATTGCAGCAATAGGTGGATGCGCTGTGTTGTACGCTGGTCAATATAAGTTTCATGAAAGCACTTCCAACACACTTGATTACGTTGTGAGTCAGGCTCAATTCGTGGCGGAAAATCTCAGGAACGTGTCAAGTTCTTTCGATTCAGCTAAGCAGCTTGTGGTAGGGTTTCCTGTGCCTCTAGATCTTGGATCGGACCTTGATGGTCTAAACAAGAAAGTCACCACTGCTGCTCGTTCTATCTCCGAGAAGACTCATGATAATTCAAAGATCATACGCCATGTCATAGATGGAGTGAGATTGGCTCTTGTTATTGTTGTTGCTGTTATGCTCTTTGTCACATTTGTAGGATTCTTATTTTCTTTACTTGGGTGGCAGTGTCCAGTATACTTCTTGGCGCTTATTGGATGGATTCTTGTTACTGGCACCTTGCTCCTTTGTGGAGCATTTCTCTTTGTTCATAATGTGACTGGCGACGCATGTGTTGCGATGGATGAGTGGGTTGTGAACCCCACTGCGCATACAGCGTTGGATGACATTCTTCCATGCGTGGAGAGTGAAACCGCGGTGGAAGCCTTGCTACGAAGCAAGGCGGTGGCACAAACTGTTATTCAAGTATTTGACACAGTGATTAGCAATGTGACAAACGGAAAATTCATAGCCAACTACAACCAATCAGGTCCCCTGGTGCCTCTTCTCTGCAATCCATTCAACAGCGACTTCACACCTCGGCAGTGTGCGCCAGGGGAAGTCACATTCGACAAGGCCACCGAGGTGTGGAAGAATTACACATGCGAGGTGAATTCGAGTTCGTCTGAAGAATGCAGGAGTGAGGGTCGTTTGACACCAAGCATATACAAGAATCTGGCGTCAGTGGTGAATGTGACGTATGGTTTGTTACATTATGGGCCATTTTTGATTGAGTTAGTTGACTGCAGTTTTGCGCGGAAAGCATTCGCGGAGATTAGCAGCGATTATTGTCCTGCTTTGCGGAGATATACTGAATGGGTTTATTTGGGATCGCTTGTGTTGTCTGTGGCCGTAATGCTCTCTTTGATATTTTGGATCGTCTTTGTCAGAGAGCAGTGGCAACTTCTTCACCCCTTTGCTTATTAA 1566 0.4336 MMPCFITSKSSPSFFLLLFFCLFLFLFSASTFSNARVTDGVGEKEVETMKSMSEAKKNANMSLVLAKERTRRRDFFNHFNLYTGGWNISDSDYITSVLSTAVPFFAVAVAWFVVFALFLFICACYCCCNGEPNDYSKTLHHFSCILLILCTIAAIGGCAVLYAGQYKFHESTSNTLDYVVSQAQFVAENLRNVSSSFDSAKQLVVGFPVPLDLGSDLDGLNKKVTTAARSISEKTHDNSKIIRHVIDGVRLALVIVVAVMLFVTFVGFLFSLLGWQCPVYFLALIGWILVTGTLLLCGAFLFVHNVTGDACVAMDEWVVNPTAHTALDDILPCVESETAVEALLRSKAVAQTVIQVFDTVISNVTNGKFIANYNQSGPLVPLLCNPFNSDFTPRQCAPGEVTFDKATEVWKNYTCEVNSSSSEECRSEGRLTPSIYKNLASVVNVTYGLLHYGPFLIELVDCSFARKAFAEISSDYCPALRRYTEWVYLGSLVLSVAVMLSLIFWIVFVREQWQLLHPFAY 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02243 521 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 45 513 IPR040283 -
Cca11g02243 521 PANTHER TRANSMEMBRANE PROTEIN 45 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02243 Cca-Chr11 48692038 48694599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02243 - - gmx:100809538 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02243 11 48692038 48694599 Cca11g00124 11 1472611 1477524 ECH
Cca11g02243 11 48692038 48694599 Cca03g01600 03 34807104 34812685 ECH
Cca11g02243 11 48692038 48694599 Cca11g02243 11 48692038 48694599 ECH